Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq10 123 2e-23 >seq10 Length=1852485 Score = 123 bits (136), Expect = 2e-23 Identities = 154/210 (73%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||||||||||||||| |||||||||||| |||| ||| |||| || || || Sbjct 1590812 GTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTG 1590871 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || || | |||||| ||||| || || | |||||||||||| || || Sbjct 1590872 CTTGCCGGCAAAGATAAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTT 1590931 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||| ||| ||||| | || || |||||||| || Sbjct 1590932 CGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAACCTCAAGCGTGATGGTCTTGCCAGT 1590991 Query 45313 CAGAGTCTTCACAAAGATTTGCAT-GTTGC 45341 ||| |||||||||||||| ||||| ||||| Sbjct 1590992 CAGCGTCTTCACAAAGATCTGCATGGTTGC 1591021 Score = 118 bits (130), Expect = 8e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||||||||||||||| |||||||||||| |||| ||| |||| || || || Sbjct 1590356 GTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTG 1590415 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || || | |||||| ||||| || || | |||||||||||| || || Sbjct 1590416 CTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTT 1590475 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||| ||| ||||| | || || |||||||| || Sbjct 1590476 CGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAACCTCAAGTGTGATGGTCTTGCCAGT 1590535 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| |||||||||||||| |||||| Sbjct 1590536 CAGCGTCTTCACAAAGATCTGCATG 1590560 Score = 118 bits (130), Expect = 8e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||||||||||||||| |||||||||||| |||| ||| |||| || || || Sbjct 1590584 GTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTG 1590643 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || || | |||||| ||||| || || | |||||||||||| || || Sbjct 1590644 CTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTT 1590703 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||| ||| ||||| | || || |||||||| || Sbjct 1590704 CGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAACCTCAAGTGTGATGGTCTTGCCAGT 1590763 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| |||||||||||||| |||||| Sbjct 1590764 CAGCGTCTTCACAAAGATCTGCATG 1590788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074458493234