Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 275 6e-69 seq8 230 2e-55 seq10 100 3e-16 >seq4 Length=2372320 Score = 275 bits (304), Expect = 6e-69 Identities = 406/569 (71%), Gaps = 6/569 (1%) Strand=Plus/Minus Query 23135 TTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATC 23194 ||||||| ||||||||||||||||| || ||||||||||| ||| | |||| || Sbjct 2278750 TTGCACGCGTCCTTGTAGAGCATGTATGGGGTGCCCGTCTCCGTCTGGGCGTCGAGAATG 2278691 Query 23195 GCTCGCCACATAGTCTGAGCGTGAACACGT-CGCACGTACCT-GCCTTCTTCCTCGTACT 23252 || ||| | | || | |||| | | || ||| ||| || ||||||||| Sbjct 2278690 GCAAACCAGA--GCTTGGATGCCGACACCTTCTTGCGGCCCTTGCCCTCGGCCTCGTACT 2278633 Query 23253 TTTGGTACAACGCG-TCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATC 23311 | | ||||| ||| ||||| ||| | ||||| ||| | || ||||| | | | Sbjct 2278632 TCTCGTACAG-GCGCTCAAACTCGTCGCCGTATGTGTCCGAGAGACCGGGGCACTCGTGC 2278574 Query 23312 GGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATC 23371 || |||||||| ||||| | || |||||||| ||||||| || || || | | Sbjct 2278573 GGGCACATGAGCGTCCACTCTTCGTTGGCCTCAACGCGCTTCATAAACAGGTCGGGCACC 2278514 Query 23372 CATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAA 23431 || || ||| |||| || |||||||| ||| |||||| ||||||||||| |||| Sbjct 2278513 CACAGCGCGAAGAAGAGGTCGCGGGCACGCTGCTCCTCAACACCGGTGTTCTTCTTCAGC 2278454 Query 23432 TCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGT 23491 || | |||||| || | ||| || ||||||||||||||||| |||||||| ||||| || Sbjct 2278453 TCGAGAAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTACACGGCAAAGGCGCCGGGC 2278394 Query 23492 CTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGC 23551 | ||| ||||||||||| |||||||| || |||||||||||| |||| | ||||| ||| Sbjct 2278393 CGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATGGGC 2278334 Query 23552 ACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTG 23611 ||||| ||||| || |||| ||| || | ||| || | || || | |||| Sbjct 2278333 ACGAGCCCGTTCGAGTGGCCGTTGGTGCCGGCAATGTACGAGCCGCTGGCGCGGATGTTG 2278274 Query 23612 TGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTG 23671 || ||| | || ||||| ||| | | || || ||||| || || || || || Sbjct 2278273 TGCACGCTAAGGCCAATGCCGCCGGCTGTCTTGGAGATCATGGCACACGTCTTGAGCGTA 2278214 Query 23672 TCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 ||||||||||||||||||||||| || || Sbjct 2278213 TCGTAGATGCCCTCGATGCTGTCGTCCTT 2278185 Score = 145 bits (160), Expect = 7e-30 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 22108 GTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGT 22167 ||| || |||||||| |||||||| | ||| | | ||| || || ||||||||||| Sbjct 2280442 GTCGACCGTAAACTGGATGGCGTTGGTGGCGGCACGCGAGCGCAGGTAGTACATGCCCGT 2280383 Query 22168 CTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAA 22227 ||| || ||| ||||||||||||||| || || ||||| | || ||| | | || Sbjct 2280382 CTTAAGGCCCCGCTTCCACGCGTAAAAGTGCATGGACGTGAGCTTGCCAAAGTTGGGGTC 2280323 Query 22228 GTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCAT 22287 | |||| ||| ||||||||||| ||||| |||||||| || || ||||| || ||||| Sbjct 2280322 GGAGATGTGCACGTTGAACGACTGGCTCTGGTCGATAAAGGCGCCGCGATCAGCAGCCAT 2280263 Query 22288 ATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAG 22332 | |||| |||||| || | ||||| || ||||||||||| Sbjct 2280262 GTCAATCAGCGTACGCTGGGAGAGCTCCCACACCGTCTTGTACAG 2280218 Score = 82.4 bits (90), Expect = 7e-11 Identities = 112/155 (72%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 23807 TCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTAT 23866 |||||||| || |||| ||| || ||||| || || |||||||||||||| | ||||| Sbjct 2277914 TCGATGGCTGCGTCAACGTCTTCGCCGTGCATGCCAATGGCGACGCGCATGAACATGTGC 2277855 Query 23867 TGAGGTCTCTCG---ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTT 23923 || || | |||| ||| | |||||| || || | ||| || || || | | ||| Sbjct 2277854 TGGGGGCGCTCGGCAACCTT---GCCGTTCATCTTCAGCAGGTACGAGCGCTCAAGCGTC 2277798 Query 23924 TTAAATCCAAAATAGTCATAGTTAAAGTCACGATC 23958 || || ||||| ||| |||| |||||||| || Sbjct 2277797 TTGAAGCCAAAGAAGTTGAAGTTGAAGTCACGCTC 2277763 >seq8 Length=1951132 Score = 230 bits (254), Expect = 2e-55 Identities = 488/721 (68%), Gaps = 18/721 (2%) Strand=Plus/Plus Query 57578 CATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGA 57637 ||||||||| ||||| | || || || ||||||| || || || |||||||| || Sbjct 1783161 CATGTACAAGAAGGCCGTCGCCTCCTTCTGGACCGCGGAGGAGGTTGACCTGTCGCGCGA 1783220 Query 57638 TCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGC 57697 || | | ||| |||||| || | ||| | ||||| || ||||| | || Sbjct 1783221 CCTCGACCACTGGCGCGGCCTCAAGGACACGGAGCAGCACTTTATCAAGCACGTCCTCGC 1783280 Query 57698 GTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGA 57757 || |||||||| ||| || ||||| |||||||| | ||||| | || || Sbjct 1783281 CTTCTTCGCCGCCAGCGACGGCATTGTGAACGAGAACCTCGTCGAGCGCTTCATGTGCGA 1783340 Query 57758 AGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCA 57817 ||||| || | |||||| | ||||| ||||| || || | ||||| ||| | || Sbjct 1783341 GGTGCAGCTGCCAGAGGCGCGCTGCTTCTACGGCTTCCAGATTATGATTGAGAACATCCA 1783400 Query 57818 TTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAG 57877 || || ||||| ||||| |||||||| |||||| | || ||| | ||||| | | Sbjct 1783401 CTCTGAGATGTACTCGCTGCTCATCGACACGTACATCAACGACCCGCAGGAGAAGCACAT 1783460 Query 57878 ACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG---AAGGCAGAGTGGTCAAT 57934 || |||||||| | || || ||||||| || |||| ||||| |||||| | || Sbjct 1783461 GCTCTTCAACGCCGTTGAGACGCTGCCCGC---CGTCAAGCGCAAGGCCGAGTGGGCCAT 1783517 Query 57935 CAAATGGATAAA----AAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCG 57990 ||||| | ||||| |||| | || || ||| | | |||| || |||| Sbjct 1783518 GCGCTGGATCGACCACAAGCG----GGCCTCCTTTGCGGAGCGCGTCGTCGCCTTTGCCG 1783573 Query 57991 CCGTCGAAGGTATATTCTTTT-CGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGC 58049 | ||||| || || ||||| |||| | || || || || || ||| | ||||| ||| Sbjct 1783574 CTGTCGAGGGCATCTTCTTCAGCGGGTCG-TTCGCCGCCATCTTCTGGCTCAAGAAGCGC 1783632 Query 58050 GGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCAT 58109 ||||| ||||||||||||||| ||||||| | || ||||||||||| || || Sbjct 1783633 GGCCTCATGCCCGGCCTGACGCAGTCCAACGAGCTCATCAGCCGCGACGAGGGCCTGCAC 1783692 Query 58110 ACTGATTTTGCGTGCCTAATGTACTCTCACATTG-TCAATAAACCGACGCGGGATCGCAT 58168 || ||||| ||||| |||| ||| || || ||| || ||| | ||| ||| | Sbjct 1783693 TGCGACTTTGCCTGCCTCATGTTCTC-CATGCTGCACAAGAAGCCGCCCAAGGAGCGCGT 1783751 Query 58169 CTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACC 58228 | | | ||| |||| || || |||| ||| || | |||||| | ||||| || || || Sbjct 1783752 CATTGGCATCATCATGGACGCCGTCGAGATTGAGCAGGAGTTTTTGACCGAGGCGCTGCC 1783811 Query 58229 GGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGA 58288 || || | ||||| |||||| | | ||| |||||||||||||||| |||| Sbjct 1783812 CGTCTCCCTCCTCGGCATGAACTCCACTCTCATGCGCGAGTACATTGAGTTTGTCTCCGA 1783871 Query 58289 C 58289 | Sbjct 1783872 C 1783872 >seq10 Length=1852485 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || ||||| | || ||||| || || Sbjct 1590788 CATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACACTTGAGGTTGAGCCATC 1590729 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | || | ||||| || || ||||||||| ||| | ||||| ||||| Sbjct 1590728 TGACTCGATTGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 1590669 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || |||||||| ||| | || ||| || ||||||| || || Sbjct 1590668 GCAGCGGCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACAA 1590609 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || ||||| || || ||| | ||| | || || Sbjct 1590608 CATCCAGAAGGAGAGCACGCTTCACCTTGTGCTTCGCCTGCGCGGTGG 1590561 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || || || ||||| ||||| ||||| || ||||| | || ||||| | Sbjct 1591020 CAACCATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACGCTTGAGGTTGAGC 1590961 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || ||| | || | ||||| || || ||||||||| ||| | ||||| | Sbjct 1590960 CATCTGACTCGATTGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCTG 1590901 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || || || ||||| ||| | || ||| || ||||||| | Sbjct 1590900 ACCAGCAGCGGCTTATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACT 1590841 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | ||||| || || || || ||||| || || ||| | ||| | || || Sbjct 1590840 ACAACATCCAGAAGGAGAGCACGCTTCACCTTGTGCTTCGCCTGCGCGGTGG 1590789 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || ||||| | || ||||| || || Sbjct 1590560 CATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACACTTGAGGTTGAGCCATC 1590501 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | || | ||||| || || ||||||||| ||| | ||||| ||||| Sbjct 1590500 TGACTCGATTGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 1590441 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || |||||||| ||| | || ||| || ||||||| || || Sbjct 1590440 GCAGCGGCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACAA 1590381 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || ||||| || || || Sbjct 1590380 CATCCAGAAGGAGAGCACGCTTCACCTTGTGCT 1590348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765541899680