Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq8 147 3e-30 seq4 104 3e-17 >seq8 Length=1951132 Score = 147 bits (162), Expect = 3e-30 Identities = 312/460 (68%), Gaps = 7/460 (2%) Strand=Plus/Minus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 ||||| | || || || ||||||||||| |||||||| | || || || |||||||| Sbjct 1783715 AACATGAGGCAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAC 1783656 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 ||| || |||||||| ||||| ||||| || ||||| || |||| || || ||||| Sbjct 1783655 TGCGTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGGCGAACGACCCG 1783596 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC-- 50128 |||||||| || || || ||||||||||| || | | ||| || | ||| | Sbjct 1783595 CTGAAGAAGATGCCCTCGACAGCGGCAAAGGCGACGACGCGCTCCGCAAAGGAGGCCCGC 1783536 Query 50129 -TGTCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 50186 ||| | ||||| | || ||||| |||||||| || || |||| ||| || Sbjct 1783535 TTGTGGTCGATCCAGCGCATG-GCCCACTCGGCCTTGCGCTTGACGGCGGGCAGCGTCTC 1783477 Query 50187 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 50246 | ||| || ||||| || || || | || || | || || ||||| | || Sbjct 1783476 AACGGCGTTGAAGAGCATGTGCTTCTCCTGCGGGTCGTTGATGTACGTGTCGATGAGCAG 1783417 Query 50247 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 50306 ||||| || || || ||||| ||||| ||||| || |||||||| || | || Sbjct 1783416 CGAGTACATCTCAGAGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCAGCGCGC 1783357 Query 50307 CTCGGTAATCTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGT 50365 ||| | | |||||| || | ||| || || || | | || || ||||| || |||| Sbjct 1783356 CTCTGGCAGCTGCACCTC-GCACATGAAGCGCTCGACGAGGTTCTCGTTCACAATGCCGT 1783298 Query 50366 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATG 50405 | ||||| || || || || | || || || ||||| || Sbjct 1783297 CGCTGGCGGCGAAGAAGGCGAGGACGTGCTTGATAAAGTG 1783258 >seq4 Length=2372320 Score = 104 bits (114), Expect = 3e-17 Identities = 280/426 (66%), Gaps = 2/426 (0%) Strand=Plus/Minus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 || || || |||| || ||||| | || ||||||| | | ||| || || |||||| Sbjct 2278588 CCGGGGCACTCGTGCGGGCACATGAGCGTCCACTCTTCGTTGGCCTCAACGCGCTTCATA 2278529 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 || || || || | ||| || || | || || || | || | |||||||| || Sbjct 2278528 AACAGGTCGGGCACCCACAGCGCGAAGAAGAGGTCGCGGGCACGCTGCTCCTCAACACCG 2278469 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 || ||||| || || ||||| || | | || || | |||||||| || | ||| | | Sbjct 2278468 GTGTTCTTCTTCAGCTCGAGAAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTACACG 2278409 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | || || || ||||| || ||||| || | ||| | || ||||| || | Sbjct 2278408 GCAAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCCGTGTTGTTGAAC 2278349 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 || | || ||| || | | || || || || ||||| |||| || || || Sbjct 2278348 ACGCGCAGCATGGGCACGAGCCCGTTCGAGTGGCCGTTGGTGCCGGCAATGTACGAGCCG 2278289 Query 80191 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 80250 ||||| || || || | || || || || || || | || ||||| | || Sbjct 2278288 CTGGCGCGGATGTTGTGCACGCTAAGGCCAATGCCGCCGGCTGTCTTGGAGATCATGGCA 2278229 Query 80251 CATCGTTTTAA-CGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAA 80309 || ||| || | |||||| ||||||||||| ||||| || || ||||| | || || || Sbjct 2278228 CA-CGTCTTGAGCGTATCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGGAGGAA 2278170 Query 80310 ACAGCT 80315 ||||| Sbjct 2278169 GCAGCT 2278164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267417332560