Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq8 118 1e-21 seq4 104 3e-17 >seq8 Length=1951132 Score = 118 bits (130), Expect = 1e-21 Identities = 304/457 (67%), Gaps = 7/457 (2%) Strand=Plus/Minus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 ||||| | || || || ||||||||||| ||||| || | || || | |||||||| Sbjct 1783715 AACATGAGGCAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAC 1783656 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 ||| || |||||||| ||||| ||||| || ||||| || || | || || || || Sbjct 1783655 TGCGTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGGCGAACGACCCG 1783596 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC-- 42233 |||||||| || || || || |||||||| | | | ||| || | ||| | Sbjct 1783595 CTGAAGAAGATGCCCTCGACAGCGGCAAAGGCGACGACGCGCTCCGCAAAGGAGGCCCGC 1783536 Query 42234 -TGTCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 ||| | ||||| | || ||||| |||||||| || || |||| ||| || Sbjct 1783535 TTGTGGTCGATCCAGCGCATG-GCCCACTCGGCCTTGCGCTTGACGGCGGGCAGCGTCTC 1783477 Query 42292 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAG 42351 | ||| || ||||| || || || | || || | || || ||||| | || Sbjct 1783476 AACGGCGTTGAAGAGCATGTGCTTCTCCTGCGGGTCGTTGATGTACGTGTCGATGAGCAG 1783417 Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411 ||||| || || || ||||| ||||| ||||| || |||||||| || | || Sbjct 1783416 CGAGTACATCTCAGAGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCAGCGCGC 1783357 Query 42412 CTCGGTAACCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGT 42470 ||| | | ||| || || | ||| || || || | | || |||||||| || |||| Sbjct 1783356 CTCTGGCAGCTGCACCTC-GCACATGAAGCGCTCGACGAGGTTCTCGTTCACAATGCCGT 1783298 Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 42507 | ||||| || || || || | || || || ||||| Sbjct 1783297 CGCTGGCGGCGAAGAAGGCGAGGACGTGCTTGATAAA 1783261 >seq4 Length=2372320 Score = 104 bits (114), Expect = 3e-17 Identities = 280/426 (66%), Gaps = 2/426 (0%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || || | ||| ||||| | | ||||||| | | | | || || |||||| Sbjct 2278588 CCGGGGCACTCGTGCGGGCACATGAGCGTCCACTCTTCGTTGGCCTCAACGCGCTTCATA 2278529 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 || || || || | ||| || || | || || || | || | |||||||| || Sbjct 2278528 AACAGGTCGGGCACCCACAGCGCGAAGAAGAGGTCGCGGGCACGCTGCTCCTCAACACCG 2278469 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 || ||||| || || ||||| || | | || || | |||||||| || | ||| | | Sbjct 2278468 GTGTTCTTCTTCAGCTCGAGAAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTACACG 2278409 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || ||||| ||||| || ||||| || | ||| | || ||||| || | Sbjct 2278408 GCAAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCCGTGTTGTTGAAC 2278349 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | || ||| || | | || || || || ||||| |||| || || || Sbjct 2278348 ACGCGCAGCATGGGCACGAGCCCGTTCGAGTGGCCGTTGGTGCCGGCAATGTACGAGCCG 2278289 Query 72274 CTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 72333 ||||| || || ||| | || || || || || || | || ||||| | || Sbjct 2278288 CTGGCGCGGATGTTGTGCACGCTAAGGCCAATGCCGCCGGCTGTCTTGGAGATCATGGCA 2278229 Query 72334 CATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 72392 || ||| || | |||||| ||||||||||| || || || ||| ||||| | || || || Sbjct 2278228 CA-CGTCTTGAGCGTATCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGGAGGAA 2278170 Query 72393 ACAGCT 72398 ||||| Sbjct 2278169 GCAGCT 2278164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137908057040