Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq8 242 5e-59 seq4 127 3e-24 >seq8 Length=1951132 Score = 242 bits (268), Expect = 5e-59 Identities = 573/852 (67%), Gaps = 30/852 (4%) Strand=Plus/Plus Query 125028 ATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGAC 125087 |||||||| ||||| |||||||| ||||| | || ||||| || ||||| ||| Sbjct 1783162 ATGTACAAGAAGGCCGTCGCCTCCTTCTGGACCGCGGAGGAGGTTGACCTGTCGCGCGAC 1783221 Query 125088 CTGTACGATTGGGAGACTCGTT-TGACTGAAACTGAGCGAGAGTTTATATCGCACATTTT 125146 || || | ||| | || | | || || |||| | ||||| |||| | | Sbjct 1783222 CTCGACCACTGG----CGCGGCCTCAAGGACACGGAGCAGCACTTTATCAAGCACGTCCT 1783277 Query 125147 GGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTC 125205 |||||||| |||| | ||| || || || ||||| || || || || || ||| Sbjct 1783278 CGCCTTCTTCGCCGCCAGCGACGGCATTGTGAACGAGAACCTCGTCGAG-CGCTTCATGT 1783336 Query 125206 AAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACG 125265 ||| || | ||||||| | ||||| ||||| ||||| || |||||||||||| Sbjct 1783337 GCGAGGTGCAGCTGCCAGAGGCGCGCTGCTTCTACGGCTTCCAGATTATGATTGAGAACA 1783396 Query 125266 TGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC 125325 | ||||| || |||||||| || || |||| |||||| ||| ||||| || | Sbjct 1783397 TCCACTCTGAGATGTACTCGCTGCTCATCGACACGTACATCAACGACCCGCAGGAGAAGC 1783456 Query 125326 ACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGG 125381 |||||||||| ||||| | || ||| |||| | ||| || ||||| | ||| Sbjct 1783457 ACATGCTCTTCAACGCCGTTGAGACGCTGCCCGC----CGTCAAGCGCAAGGCCGAGTGG 1783512 Query 125382 GTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCC 125441 | || || |||||||| || | | | || | || || | | || || || ||| Sbjct 1783513 GCCATGCGCTGGATCGACCACAAGCGGGCCTCCTTTGCGGAGCGCGTCGTCGCCTTTGCC 1783572 Query 125442 GCCGTAGAGGGCATCTTCTT-TTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCG 125500 || || |||||||||||||| ||||| | || || |||||||| |||||||||||||| Sbjct 1783573 GCTGTCGAGGGCATCTTCTTCAGCGGGTCG-TTCGCCGCCATCTTCTGGCTCAAGAAGCG 1783631 Query 125501 CGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACA 125560 ||| ||||||||||| |||||||| |||||| | || || ||||||||||| || Sbjct 1783632 CGGCCTCATGCCCGGCCTGACGCAGTCCAACGAGCTCATCAGCCGCGACGAGGGCCTGCA 1783691 Query 125561 CTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAG-TGCAGATCCAGCG 125619 ||| ||||||||| || |||| || ||| | | || || | || | Sbjct 1783692 CTGCGACTTTGCCTGCCTCATGTT------CTCCATGCTGCACAAGAAGCCG--CC--CA 1783741 Query 125620 ATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCG 125679 | || ||||| ||| | | || ||||| ||| || || |||||| | |||| Sbjct 1783742 AGGAGCGCGTCATTGGCATCATCATGGACGCCGTCGAGATTGAGCAGGAGTTTTTGACCG 1783801 Query 125680 AATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGT 125739 | | || || ||| | | | |||||||||| || || ||| |||||||||| |||| Sbjct 1783802 AGGCGCTGCCCGTCTCCCTCCTCGGCATGAACTCCACTCTCATGCGCGAGTACATTGAGT 1783861 Query 125740 TTGTGGCAGATCGTCTACT-GTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAAT 125798 |||| | || || || || || | | | | | |||| | |||||||||| || Sbjct 1783862 TTGTCTCCGACCGCCTCCTCGTCAGCCTCGGCT-ACGACAAGGTCTACAACGCCACCAAC 1783920 Query 125799 CCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAG 125858 ||||| || ||| | ||| || | ||||| ||||||||||| || ||| Sbjct 1783921 CCCTTCCCCTTTATGGAGAACATTTCCATCGAGGGCAAGACCAACTTCTTTGAGCGCCGC 1783980 Query 125859 GTCAGCGAGTAC 125870 || ||||||||| Sbjct 1783981 GTGAGCGAGTAC 1783992 >seq4 Length=2372320 Score = 127 bits (140), Expect = 3e-24 Identities = 294/437 (67%), Gaps = 6/437 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || |||||| || | | || || ||||| ||||| | ||| ||| | | | || Sbjct 2278308 ACCAACGGCCACTCGAACGGGCTCGTGCCCATGCTGCGCGTGTTCAACAACACGGCGCGC 2278367 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||||||||| || ||||| ||||| | ||||| ||| | || || ||| Sbjct 2278368 TACGTCGACCAGGGCGGCAACAAGCGGCCCGGCGCCTTTGCCGTGTACCTCGAGCCGTGG 2278427 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| ||| | ||||||||| ||||| || || ||| | || |||| ||| || Sbjct 2278428 CACGCAGACATCTTTGACTTTCTCGAGCTGAAGAAGAACACCGGTGTTGAGGAGCAGCGT 2278487 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 ||| | ||| | || | || || |||||||| || |||| ||||||||||| | | | Sbjct 2278488 GCCCGCGACCTCTTCTTCGCGCTGTGGGTGCCCGACCTGTTTATGAAGCGCGTTGAGGCC 2278547 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 | | |||| || |||||||| || || |||||||| || || | ||| Sbjct 2278548 AACGAAGAGTGGACGCTCATGTGCCCGCACGAGTGCCCCGGTCTCTCGGACACATACGGC 2278607 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAG-ACGAG 97164 || ||||||||| | |||| | |||||| |||||| | || || | | | Sbjct 2278608 GACGAGTTTGAGCGCCTGTACGAGAAGTACGAGGCCGAGGGCAAGGGCCGCAAGAAGGTG 2278667 Query 97165 TCGATGCACGAGAACTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 ||| ||| | || ||| |||| || ||| || ||| ||||| || || || Sbjct 2278668 TCG--GCATCCAAGCTCTGGTTTGCCATTCTCGAC-GCCCAGACGGAGACGGGCACCCCA 2278724 Query 97224 TACATTCTCTACAAGGA 97240 ||||| ||||||||||| Sbjct 2278725 TACATGCTCTACAAGGA 2278741 Score = 120 bits (132), Expect = 5e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGAT-TCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGG 98098 |||||||| || |||||| | ||| | | |||||||| || |||||||| || | || Sbjct 2280221 TACAAGACGGTGTGGGAGCTCTCCCAGCGT-ACGCTGATTGACATGGCTGCTGATCGCGG 2280279 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG 98158 | || || |||||||| || |||||||| || || | |||| |||| || | Sbjct 2280280 CGCCTTTATCGACCAGAGCCAGTCGTTCAACGTGCACATCTCCGACCCCAACTTTGGCAA 2280339 Query 98159 TATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 | || || || ||||||||||| ||||| |||||| ||||||||||||||||| || Sbjct 2280340 GCTCACGTCCATGCACTTTTACGCGTGGAAGCGGGGCCTTAAGACGGGCATGTACTACCT 2280399 Query 98219 GAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGACGTGAA 98266 | | | | |||||||| ||||| | |||||||| |||| ||| Sbjct 2280400 GCGCTCGCGTGCCGCCACCAACGCCATCCAGTTTACGGTCGACGCGAA 2280447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057773461040