Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq10 109 5e-19 >seq10 Length=1852485 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876 ||||| || | ||| || ||||||| ||| | ||||| ||||| || ||| ||||| Sbjct 1590825 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAG 1590884 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || | | ||||| || || || || || || ||||| | || || ||||||||| Sbjct 1590885 ATAAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTC 1590944 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 | | | ||||| | || || |||| ||||||||| || ||||| || || |||||| Sbjct 1590945 TCAATCGAGTCAGATGGCTCAACCTCAAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACA 1591004 Query 94997 AAGATCTGCATGCTT 95011 |||||||||||| || Sbjct 1591005 AAGATCTGCATGGTT 1591019 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876 ||||| || | ||| || ||||||| ||| | ||||| ||||| || || ||||| Sbjct 1590369 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAG 1590428 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || | | ||||| || || || || || || ||||| | || || ||||||||| Sbjct 1590429 ATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTC 1590488 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 | | | ||||| | || || |||| |||||||| || ||||| || || |||||| Sbjct 1590489 TCAATCGAGTCAGATGGCTCAACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACA 1590548 Query 94997 AAGATCTGCATGC 95009 ||||||||||||| Sbjct 1590549 AAGATCTGCATGC 1590561 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876 ||||| || | ||| || ||||||| ||| | ||||| ||||| || || ||||| Sbjct 1590597 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAG 1590656 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || | | ||||| || || || || || || ||||| | || || ||||||||| Sbjct 1590657 ATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTC 1590716 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 | | | ||||| | || || |||| |||||||| || ||||| || || |||||| Sbjct 1590717 TCAATCGAGTCAGATGGCTCAACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACA 1590776 Query 94997 AAGATCTGCATGC 95009 ||||||||||||| Sbjct 1590777 AAGATCTGCATGC 1590789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290337039440