Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq8 147 3e-31 seq2 147 3e-31 >seq8 Length=1951132 Score = 147 bits (162), Expect = 3e-31 Identities = 180/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| |||| || || || |||||||| || | |||||||| || || Sbjct 1811634 GCCAAGCGCCATCGCAAGATC-CTCCGCGACAACATCCAGGGTGTGACCAAGCCCGCCAT 1811692 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| |||||||| |||||||| | || || | |||| || |||| Sbjct 1811693 CCGCCGTCTCGCTCGCCGTGGTGGTGTCAAGCGCATTTCCGGCCTCATCTACGAGGAGAC 1811752 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || ||| | |||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 1811753 CCGCTCTGTGCTCAAGACCTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 1811812 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| |||||| || | || ||||||| || | || || || || Sbjct 1811813 GCACGCTCGCCGCAAGACCGTCACCGCCCTCGACGTCGTCTACGCTCTCAAGCGCCAGGG 1811872 Query 16672 CCG 16674 ||| Sbjct 1811873 CCG 1811875 >seq2 Length=2479747 Score = 147 bits (162), Expect = 3e-31 Identities = 180/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| |||| || || || |||||||| || | |||||||| || || Sbjct 440126 GCCAAGCGCCATCGCAAGATC-CTCCGCGACAACATCCAGGGTGTGACCAAGCCCGCCAT 440068 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| |||||||| |||||||| |||| || | |||| || |||| Sbjct 440067 CCGCCGTCTCGCTCGCCGTGGTGGTGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 440008 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || ||| | |||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 440007 CCGCTCTGTGCTCAAGACCTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 439948 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| |||||| || | || | ||||| || | || || || || Sbjct 439947 GCACGCTCGCCGCAAGACCGTCACCGCCCTCGACGTTGTCTACGCTCTCAAGCGCCAGGG 439888 Query 16672 CCG 16674 ||| Sbjct 439887 CCG 439885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075059196722