Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq8 132 6e-26 >seq8 Length=1951132 Score = 132 bits (146), Expect = 6e-26 Identities = 307/457 (67%), Gaps = 7/457 (2%) Strand=Plus/Minus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 ||||| | || || || ||||||||||| |||||||| | || || || |||||||| Sbjct 1783715 AACATGAGGCAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAC 1783656 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 ||| || |||||||| ||||| ||||| || ||||| || |||| ||||| || || Sbjct 1783655 TGCGTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGGCGAACGACCCG 1783596 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC-- 33472 |||||||| || || || || |||||||| | | | ||| || | ||| | Sbjct 1783595 CTGAAGAAGATGCCCTCGACAGCGGCAAAGGCGACGACGCGCTCCGCAAAGGAGGCCCGC 1783536 Query 33473 -TGTCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 ||| | ||||| | || ||||| |||||||| || || |||| ||| || Sbjct 1783535 TTGTGGTCGATCCAGCGCATG-GCCCACTCGGCCTTGCGCTTGACGGCGGGCAGCGTCTC 1783477 Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33590 | ||| || ||||| || || || | || || | || || ||||| | || Sbjct 1783476 AACGGCGTTGAAGAGCATGTGCTTCTCCTGCGGGTCGTTGATGTACGTGTCGATGAGCAG 1783417 Query 33591 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33650 ||||| || || || ||||| ||||| ||||| || |||||||| || | || Sbjct 1783416 CGAGTACATCTCAGAGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCAGCGCGC 1783357 Query 33651 CTCGGTAATCTGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGT 33709 ||| | | ||| || || | ||| || || || | | || || ||||| || |||| Sbjct 1783356 CTCTGGCAGCTGCACCTC-GCACATGAAGCGCTCGACGAGGTTCTCGTTCACAATGCCGT 1783298 Query 33710 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33746 | ||||| || || || || | || || || ||||| Sbjct 1783297 CGCTGGCGGCGAAGAAGGCGAGGACGTGCTTGATAAA 1783261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946000826640