Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq4 116 4e-21 seq8 91.5 1e-13 seq10 82.4 7e-11 >seq4 Length=2372320 Score = 116 bits (128), Expect = 4e-21 Identities = 330/493 (67%), Gaps = 17/493 (3%) Strand=Plus/Minus Query 148238 CTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTT 148297 |||||| ||||||||||| || ||||| ||| ||| || || | ||| || || Sbjct 2278652 CTTGCCCTCGGCCTCGTACTTCTCGTACAGGCGCTCAAACTCGTCGCCGTATGTGTCCGA 2278593 Query 148298 TAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCCTCCT--GTCTTTACCCTC 148355 | |||||| ||||||| |||||||| | | ||| | | || | | || || | | Sbjct 2278592 GAGACCGGGGCACTCGTGCGGGCACATGAGCGTCCACT--CTTCGTTGGCCTCAACGCGC 2278535 Query 148356 TTCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTCG 148415 ||||||||||| || || ||||| || || | || ||||| || | ||||| Sbjct 2278534 TTCATAAACAGGTCGGGCACCCACAGCGCGAAGAAGAGGTCGCGGGCACGCTGCTCCTCA 2278475 Query 148416 GCACCCATATTGCGCTTTAGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGATG 148475 |||| | || ||| || || | ||| ||| | |||||||||||| ||||||| | Sbjct 2278474 ACACCGGTGTTCTTCTTCAGCTCGAGAAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGG 2278415 Query 148476 TATACGGTCATGGCGCCTTTCC---TTTTACCTCCTTGATCGACATGGCGTAGCATGCTA 148532 || |||| | |||||| || | || || || || ||||| | ||| | || | Sbjct 2278414 TACACGGCAAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCCGTGTTG 2278355 Query 148533 TTAAAAACACGCAATGCA-GGTCCCAATCCCGCCGCAGT-TCCGTTTGTGGATTCAATTT 148590 || || || |||| ||| || | | | |||| ||| ||||| ||| ||| | Sbjct 2278354 TTGAACACGCGCA--GCATGGGCACGAGCCCGTTCGAGTGGCCGTTGGTGCCGGCAA-TG 2278298 Query 148591 TACTA-TTGGTGGCGCGAAT-TTGAGTGACATTCAGGCCGATGCCGCCTCCGTGT-TTAG 148647 ||| | | ||||||| || ||| | || | ||||| |||||||| | ||| || | Sbjct 2278297 TACGAGCCGCTGGCGCGGATGTTGTG-CACGCTAAGGCCAATGCCGCCGGC-TGTCTTGG 2278240 Query 148648 ATATCATGGCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAATGT 148707 | ||||||||||| ||||| || | |||||||| | || ||||| || | ||| Sbjct 2278239 AGATCATGGCACACGTCTTGAGCGTATCGTAGATGCCCTCGATGCTGTCGTCCTTCATGG 2278180 Query 148708 TAAGCAGGTAGCA 148720 | || ||| |||| Sbjct 2278179 TGAGGAGGAAGCA 2278167 >seq8 Length=1951132 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 119642 CTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATT 119701 || |||||||| ||| || ||||| || || ||||||||||| | || ||||| | Sbjct 1783995 CTGGTACTCGCTCACGCGGCGCTCAAAGAAGTTGGTCTTGCCCTCGATGGAAATGTTCTC 1783936 Query 119702 CATAAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAG 119761 |||||| ||| || || | | |||| | |||||||||||| | || | || Sbjct 1783935 CATAAAGGGGAAGGGGTTGGTGGCGTTGTAGACCTTGTCGTAGCCGAGGCTGACGAGGAG 1783876 Query 119762 TCGATCTGCCACAAACTCGATGTATTCGCACATG-GATTGCGAATTCATGCCCAACATAG 119820 || || | |||||||| ||||| |||| |||| || || || |||||||| | | | Sbjct 1783875 GCGGTCGGAGACAAACTCAATGTACTCGCGCATGAGAGTG-GAGTTCATGCCGAGGAGGG 1783817 Query 119821 CGACCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTC 119869 ||| || | || | ||| || || |||| ||||| ||||| || || Sbjct 1783816 AGACGGGCAGCGCCTCGGTCAAAAACTCCTGCTCAATCTCGACGGCGTC 1783768 >seq10 Length=1852485 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 71720 GGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAA 71779 || || || ||||| | || |||||||||||||| || ||||| || |||||||| | Sbjct 329536 GGCAAGATGCACGGGTTTCTGCGCATGTACTGGGCGAAGAAGATCCTGGAGTGGACAGCA 329477 Query 71780 ACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGT 71839 || |||||| | ||||| || | | | ||| ||||| |||||| ||||| || Sbjct 329476 ACGCCCGAGGACGCGCTGCAGACAGCGCTCTTTCTCAACGACAGATACGAGCTCGATGGC 329417 Query 71840 CGCGATCCTAACGGT 71854 ||||| || |||||| Sbjct 329416 CGCGACCCAAACGGT 329402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478661478574880