Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4 255 2e-62 >seq4 Length=2372320 Score = 255 bits (282), Expect = 2e-62 Identities = 450/648 (69%), Gaps = 6/648 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||||||| ||||||| ||| ||| |||| || | | || ||| || Sbjct 2278107 TTCACGCACGCGTCGCCAACGCTGTTCAACTCTGGCACGCCCATCCCGCAGCTGAGCAGC 2278166 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || || | ||||||||||| ||||||||| |||| || || || |||| Sbjct 2278167 TGCTTCCTCCTCACCATGAAGGACGACAGCATCGAGGGCATCTACGATACGCTCAAGACG 2278226 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | || ||||||| || ||||| ||||| | | || | ||||| | || || Sbjct 2278227 TGTGCCATGATCTCCAAGACAGCCGGCGGCATTGGCCTTAGCG-TGCACAACATCCGCGC 2278285 Query 363726 ACAGAA-CAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 ||| | |||||| |||||| || ||||||| ||||| || |||||||| | Sbjct 2278286 -CAGCGGCTCGTACATTGCCGGCACCAACGGCCACTCGAACGGGCTCGTGCCCATGCTGC 2278344 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 | ||||| |||| || ||| | |||||||||||||| || ||||| || || | Sbjct 2278345 GCGTGTTCAACAACACGGCGCGCTACGTCGACCAGGGCGGCAACAAGCGGCCCGGCGCCT 2278404 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 |||| |||| |||||||| || || || || ||||| ||||| ||||| ||| | Sbjct 2278405 TTGCCGTGTACCTCGAGCCGTGGCACGCAGACATCTTTGACTTTCTCGAGCTGAAGAAGA 2278464 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 |||| || ||||| |||||| || || || |||| || || ||||| | |||| Sbjct 2278465 ACACCGGTGTTGAGGAGCAGCGTGCCCGCGACCTCTTCTTCGCGCTGTGGGTGCCCGACC 2278524 Query 363965 ATTTTATGAAGCGCGTGGAGG-CAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGT 364023 |||||||||||||| |||| || ||| | ||| | ||| | ||||| ||||| || Sbjct 2278525 TGTTTATGAAGCGCGTTGAGGCCAACGAAG-AGTGGACGCTCATGTGCCCGCACGAGTGC 2278583 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 || ||||| || || || || ||||| | || || ||||| ||||| || | Sbjct 2278584 CCCGGTCTCTCGGACACATACGGCGACGAGTTTGAGCGCCTGTACGAGAAGTACGAGGCC 2278643 Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 ||||| |||| || |||| | | ||| ||||| ||||||||||| | || | Sbjct 2278644 GAGGGCAAGGGCCGCAAGAAGGTGTCGGCATCCAAGCTCTGGTTTGCCATTCTCGACGCC 2278703 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAAC 364191 |||| ||||| || || || || ||| | ||||| || |||||||| Sbjct 2278704 CAGACGGAGACGGGCACCCCATACATGCTCTACAAGGACGCGTGCAAC 2278751 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 364956 CATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCAT 365015 |||| |||| |||| || || | ||| | | ||||| || || ||||| | ||| Sbjct 2280187 CATTGCAGGCATTCCCGATGACATCAAGGCCCTGTACAAGACGGTGTGGGAGCTCTCCCA 2280246 Query 365016 GCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTT 365075 ||| || || ||||| ||||| || |||||||| || |||||| |||||||||||||| Sbjct 2280247 GCGTACGCTGATTGACATGGCTGCTGATCGCGGCGCCTTTATCGACCAGAGCCAGTCGTT 2280306 Query 365076 TAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTG 365135 ||||| ||| | | || | || | |||||| || |||||||| || |||| ||| Sbjct 2280307 CAACGTGCACATCTCCGACCCCAACTTTGGCAAGCTCACGTCCATGCACTTTTACGCGTG 2280366 Query 365136 GAAATCCGGTCTTAAGACAGG 365156 ||| || |||||||| || Sbjct 2280367 GAAGCGGGGCCTTAAGACGGG 2280387 Score = 109 bits (120), Expect = 1e-18 Identities = 188/273 (69%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 364615 ACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACG 364674 |||| |||||| || || || |||| | | |||||||| | ||| |||| | | Sbjct 2279585 ACTTTTGAGGGCTCGCCCACCTCTGAGGGCATTCTTCAGTTTGACATGTGGGATGTGAAG 2279644 Query 364675 CCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGC 364734 || | | || ||| | ||||| |||| || ||| |||||| | || | |||| Sbjct 2279645 CCCACGGACCTGTGGGATTGGGAGTCGCTTCGCGAGCGCGTGAAGAAGGACGGCATTCGC 2279704 Query 364735 AACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAAC 364794 ||||| || | |||||||||||||| || || ||||| ||||| ||||| |||||| Sbjct 2279705 AACTCGCTGCTGGTTGCGCCCATGCCCACCGCGTCCACTGCCCAGATTCTCGGCAACAAC 2279764 Query 364795 GAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTT 364854 |||| | || || | || ||||| | || || ||||| || || || || || || Sbjct 2279765 GAGTCGATTGAGCCCTACACGAGCAACATCTACTCGCGCCGCGTGCTCTCTGGCGAGTTC 2279824 Query 364855 CCGGTAGTTAATAAGTACCTAGTCAAGGATCTT 364887 | ||| || || ||| || | ||||||| ||| Sbjct 2279825 CAGGTGGTGAACAAGCACTTGCTCAAGGACCTT 2279857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303351028320428