Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4 199 4e-46 seq8 141 9e-29 seq10 116 3e-21 seq2 114 1e-20 >seq4 Length=2372320 Score = 199 bits (220), Expect = 4e-46 Identities = 445/658 (68%), Gaps = 19/658 (3%) Strand=Plus/Minus Query 145733 TTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCC 145792 ||| |||||||||||||||||||||||||||| || ||| |||||| ||| | || Sbjct 2278756 TTCTTGTTGCACGCGTCCTTGTAGAGCATGTATGGGGTGCCCGTCTCCGTCTGGGCGTCG 2278697 Query 145793 ACGAT---AAAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCT 145849 | || ||| | | || | ||| || |||| || || |||||| | Sbjct 2278696 AGAATGGCAAACCAGAGCTTGGA-TGCCGAC--ACCTTCTTGCGGCCCTTGCCCTCGGCC 2278640 Query 145850 TCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACAC 145909 ||||| ||| ||| || ||||||| || ||||| || || || ||||| ||| Sbjct 2278639 TCGTACTTCTCGTACAGGCGCTCAAACTCGTCGCCGTATGTGTCCGAGAGACCGGGGCAC 2278580 Query 145910 TTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCT 145969 | || || ||||| |||| ||| | ||||||| | ||||||| |||||||| || Sbjct 2278579 TCGTGCGGGCACATGAGCGTCCACTCTTCGTTGGCCTCAACGCGCTTCATAAACAGGTCG 2278520 Query 145970 GGCACCCACAGCGCGTACATCAAGTCGCGCGCTT--TGCAATCCTCAGCACCCATGTTTC 146027 ||||||||||||||| | | | |||||| || ||| |||||| |||| |||| Sbjct 2278519 GGCACCCACAGCGCGAAGAAGAGGTCGCGGGCACGCTGC--TCCTCAACACCGGTGTTCT 2278462 Query 146028 GCTTCAAATTAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGG 146087 ||||| | || | | ||||||| ||||||||||| || | || ||||| | || Sbjct 2278461 TCTTCAGCTCGAGAAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTACACGGCAAAGG 2278402 Query 146088 CTCCTTTTCG---TTTGCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCA 146144 | || || ||||| |||||||| |||| || || ||||||| || ||||||| Sbjct 2278401 CGCCGGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCA 2278342 Query 146145 CCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGC 146204 ||||||| ||| ||| | | |||||| || | || | ||||| || || Sbjct 2278341 GCATGGGCACGAGCCCGTTCGAGTGGCCGTTGGTGCCGGCAATGTACGAGCCGCTGGCGC 2278282 Query 146205 GCACGCAATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCA-GTCG 146263 | | | || || | | ||| | |||||| | |||||| || ||| || ||| Sbjct 2278281 GGATGTTGTGCACGCTAAGGCCAATGCCGCCGGCTGTCTTGGAGATCATGGCACACGTC- 2278223 Query 146264 CCGAGCGTCTCGTAGATGCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACG 146321 |||||| ||||||||||| || ||||| ||| |||| ||| ||| || ||||| Sbjct 2278222 TTGAGCGTATCGTAGATGCCCTCGATGCTGTCGTCCTTC--ATGGTGAGGAGGAAGCAGC 2278165 Query 146322 AGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAA 146379 || || ||||| || ||||| || | ||||| ||| || ||||||||| || Sbjct 2278164 TGCTCAGCTGCGGGATGGGCGTGCCAGAGTTGAACAGCGTTGGCGACGCGTGCGTGAA 2278107 Score = 123 bits (136), Expect = 2e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 145049 AAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGAC 145108 |||| || || || ||||| |||||||| | | ||| || ||| | || | ||| | Sbjct 2279844 AAGTGCTTGTTCACCACCTGGAACTCGCCAGAGAGCACGCGGCGCGAGTAGATGTTGCTC 2279785 Query 145109 GTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATG 145168 ||| |||| |||| |||||||| ||||| || || || || || | |||||||||||| Sbjct 2279784 GTGTAGGGCTCAATCGACTCGTTGTTGCCGAGAATCTGGGCAGTGGACGCGGTGGGCATG 2279725 Query 145169 TACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCC 145228 ||| |||| | || ||||| | ||||| |||||| | | || |||| || Sbjct 2279724 GGCGCAACCAGCAGCGAGTTGCGAATGCCGTCCTTCTTCACGCGCTCGCGAAGCGACTCC 2279665 Query 145229 CAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTC 145284 |||||||| || || ||| |||| ||||||||||| |||| | ||||||||| Sbjct 2279664 CAATCCCACAGGTCCGTGGGCTTCACATCCCACATGTCAAACTGAAGAATGCCCTC 2279609 >seq8 Length=1951132 Score = 141 bits (156), Expect = 9e-29 Identities = 335/497 (67%), Gaps = 17/497 (3%) Strand=Plus/Plus Query 46106 CCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACT--TTCGCCGAGCGTATGGT 46163 |||| ||||| ||| |||||| || || | || | || || || ||||| | || Sbjct 1783505 CCGAGTGGGCCATGCGCTGGATCGACCACA--AGCGGGCCTCCTTTGCGGAGCGCGTCGT 1783562 Query 46164 GGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACAT 46223 |||||||| ||| |||||| |||| || || || ||||||||||| | | Sbjct 1783563 CGCCTTTGCCGCTGTCGAGGGCATCTTCTTCAGCGGGTCGTTCGCCGCCATCTTCTGGCT 1783622 Query 46224 CAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGA 46283 ||| | ||| ||||||||||||||||| ||||||||| || |||||||| Sbjct 1783623 CAAGAAGCGCGGCCTCATGCCCGGCCTGACGCAGTCCAACGAGCTCATCAGCCGCGACGA 1783682 Query 46284 GGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAGCTTGC 46343 ||||||||| |||||||| || ||| | || | ||||| | |||| | Sbjct 1783683 GGGCCTGCACTGCGACTTTGCCTGCCTCATGTTCTCCATGC---TGCACAAGAAGC---C 1783736 Query 46344 GCCC---GACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTT 46400 |||| || ||| | |||| ||| ||| || || | |||||| |||||||||| Sbjct 1783737 GCCCAAGGAGCGCGTCATTGGCATCATCATGGACGCCGTCGAGATTGAGCAGGAGTTTTT 1783796 Query 46401 TACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTC-AATGTGCGACTACA 46459 || | || ||||||| |||| || ||||||||| | || || ||| |||| |||| Sbjct 1783797 GACCGAGGCGCTGCCCGTCTCCCTCCTCGGCATGAACTC-CACTCTCATGCGCGAGTACA 1783855 Query 46460 TCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTC-ACCAGCCGAAGCATTTTCACGCG 46518 | |||||||| | ||||| || ||||| |||| || | | ||| | |||| Sbjct 1783856 TTGAGTTTGTCTCCGACCGCCTCCTCGT-CAGCCTCGGCTACGACAAGGTCTACAACGCC 1783914 Query 46519 CGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAA 46578 ||| || || |||||| | ||||| ||| | |||||||| || || || || || Sbjct 1783915 ACCAACCCCTTCCCCTTTATGGAGAACATTTCCATCGAGGGCAAGACCAACTTCTTTGAG 1783974 Query 46579 AAGCGCGTCGGCGAGTA 46595 ||||| ||||||| Sbjct 1783975 CGCCGCGTGAGCGAGTA 1783991 >seq10 Length=1852485 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | || |||||| || |||||||| ||||| Sbjct 1590332 GCCACCGCGCAGGCGCAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCT 1590391 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 1590392 CAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGG 1590451 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| ||| ||||| | ||| | | || | | ||| | Sbjct 1590452 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAAC 1590511 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || || || || || ||||||||| Sbjct 1590512 CTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATG 1590560 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| || ||||| | || | || |||||| || |||||||| ||||| Sbjct 1590560 GCCACCGCGCAGGCGAAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCT 1590619 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 1590620 CAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGG 1590679 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| ||| ||||| | ||| | | || | | ||| | Sbjct 1590680 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAAC 1590739 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || || || || || ||||||||| Sbjct 1590740 CTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATG 1590788 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| || ||||| | || | || |||||| || |||||||| ||||| Sbjct 1590788 GCCACCGCGCAGGCGAAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCT 1590847 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 1590848 CAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATAAGCCGCTGCTGGTCAGGCGG 1590907 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| ||| ||||| | ||| | | || | | ||| | Sbjct 1590908 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAAC 1590967 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || || || || || ||||||||| Sbjct 1590968 CTCAAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATG 1591016 >seq2 Length=2479747 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| |||||||| | || | ||| |||||| ||||||||||| |||||| Sbjct 86923 CCACCGCGCAGGCGCAGCACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 86864 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | ||||||||| ||||| ||| Sbjct 86863 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCCGGGGGG 86804 Query 131128 ATTCCT 131133 || ||| Sbjct 86803 ATACCT 86798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011891375360