Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq28 109 4e-19 seq8 109 4e-19 seq7 109 4e-19 seq43 105 4e-18 seq41 105 4e-18 seq38 105 4e-18 seq37 105 4e-18 seq34 105 4e-18 seq30 105 4e-18 seq23 105 4e-18 seq2 105 4e-18 seq29 91.5 1e-13 >seq28 Length=911200 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||||||| |||||||||||| |||||||||| || |||||||| Sbjct 2169 AAGTCCGTTCCCTTGGCTGCGGTTTCGCTAGAGCGTAGATAGGGACAGTGGGAATCTCGT 2228 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||| | ||| ||||||| Sbjct 2229 TAATCCATTCATGCGCGTCACCAGTTAAATGACGA 2263 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 4738 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 4797 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 4798 GCCAGTATTTAGCCTT 4813 >seq8 Length=1951132 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||||||| |||||||||||| |||||||||| || |||||||| Sbjct 1921581 AAGTCCGTTCCCTTGGCTGCGGTTTCGCTAGAGCGTAGATAGGGACAGTGGGAATCTCGT 1921522 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||| | ||| ||||||| Sbjct 1921521 TAATCCATTCATGCGCGTCACCAGTTAAATGACGA 1921487 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1919022 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 1918963 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 1918962 GCCAGTATTTAGCCTT 1918947 >seq7 Length=2024178 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||||||| |||||||||||| |||||||||| || |||||||| Sbjct 2021864 AAGTCCGTTCCCTTGGCTGCGGTTTCGCTAGAGCGTAGATAGGGACAGTGGGAATCTCGT 2021805 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||| | ||| ||||||| Sbjct 2021804 TAATCCATTCATGCGCGTCACCAGTTAAATGACGA 2021770 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2019292 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 2019233 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 2019232 GCCAGTATTTAGCCTT 2019217 >seq43 Length=321062 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1446 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 1505 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 1506 GCCAGTATTTAGCCTT 1521 >seq41 Length=387629 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 387147 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 387088 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 387087 GCCAGTATTTAGCCTT 387072 >seq38 Length=739548 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1826 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 1885 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 1886 GCCAGTATTTAGCCTT 1901 >seq37 Length=724622 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 722417 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 722358 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 722357 GCCAGTATTTAGCCTT 722342 >seq34 Length=738859 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2552 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 2611 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 2612 GCCAGTATTTAGCCTT 2627 >seq30 Length=789273 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1549 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 1608 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 1609 GCCAGTATTTAGCCTT 1624 >seq23 Length=1191819 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 3171 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 3230 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 3231 GCCAGTATTTAGCCTT 3246 >seq2 Length=2479747 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2466765 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 2466706 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 2466705 GCCAGTATTTAGCCTT 2466690 >seq29 Length=915651 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || || || || || |||||||| ||||| || | || | || |||| Sbjct 533399 ACCCGACCAAGTACTTTGGCATTGAGCTTGGCGCGCAGACCAAGATGGACGAGAAGAACG 533458 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | |||| ||| || ||||| |||| | | | | ||||| || || ||||| | Sbjct 533459 ACCGCTACATTGTCAACGGCGCGCACACGGCAGATGACCTGCAAAACACGCTCGACGGGT 533518 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGT 6498 |||| | |||||||||||||||| ||||| ||||||||||| ||||| ||||| Sbjct 533519 TTATCCAGAAGTTTGTGCTGTGTCCCAGCTGCGACAACCCGGAGACAGAGCTGCGTGTGT 533578 Query 6499 CTACCAAGAGAAACA 6513 | | |||| || || Sbjct 533579 CGAAGAAGACAATCA 533593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946571345974