Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4 104 3e-17 >seq4 Length=2372320 Score = 104 bits (114), Expect = 3e-17 Identities = 282/429 (66%), Gaps = 2/429 (0%) Strand=Plus/Minus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || || || || || | ||| ||||| | || ||||||| ||| ||| || || ||| Sbjct 2278591 AGACCGGGGCACTCGTGCGGGCACATGAGCGTCCACTCTTCGTTGGCCTCAACGCGCTTC 2278532 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 ||||| || || || | ||| || || | || || || | || | || ||||| Sbjct 2278531 ATAAACAGGTCGGGCACCCACAGCGCGAAGAAGAGGTCGCGGGCACGCTGCTCCTCAACA 2278472 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || || ||||| || || ||||| || | | || || | |||||||| || | ||| Sbjct 2278471 CCGGTGTTCTTCTTCAGCTCGAGAAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTAC 2278412 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 | ||| | | || ||||| ||||| || ||||| || | ||| | || ||||| || Sbjct 2278411 ACGGCAAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCCGTGTTGTTG 2278352 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | || | || ||| || | | || || || || ||||| || | || || Sbjct 2278351 AACACGCGCAGCATGGGCACGAGCCCGTTCGAGTGGCCGTTGGTGCCGGCAATGTACGAG 2278292 Query 63320 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379 || ||||| || || || | || || || || || || | || ||||| | Sbjct 2278291 CCGCTGGCGCGGATGTTGTGCACGCTAAGGCCAATGCCGCCGGCTGTCTTGGAGATCATG 2278232 Query 63380 GCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 63438 || || ||| || | |||||| ||||||||||| || || || ||| ||||| | || || Sbjct 2278231 GCACA-CGTCTTGAGCGTATCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGGAG 2278173 Query 63439 AAAACAGCT 63447 || ||||| Sbjct 2278172 GAAGCAGCT 2278164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630780258400