Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq10 113 4e-20 >seq10 Length=1852485 Score = 113 bits (124), Expect = 4e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 24989 AAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGT 25048 ||||| ||| ||||| || ||||| ||||| |||| || || ||||||| | || || Sbjct 1591025 AAACGCAACCATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACGCTTGAGGT 1590966 Query 25049 GGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCC 25108 ||| | |||||| | || ||| | ||| || ||| ||||| || || || || Sbjct 1590965 TGAGCCATCTGACTCGATTGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCC 1590906 Query 25109 ACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGG 25168 |||||||| |||||| |||| ||||||||||| || | || || | ||||| || | Sbjct 1590905 GCCTGACCAGCAGCGGCTTATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGAG 1590846 Query 25169 CGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||| || || || || |||||| || | ||||| Sbjct 1590845 CGACTACAACATCCAGAAGGAGAGCACGCTTCACCTTGTGCT 1590804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327186697510