Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq8 127 4e-24 >seq8 Length=1951132 Score = 127 bits (140), Expect = 4e-24 Identities = 539/837 (64%), Gaps = 32/837 (4%) Strand=Plus/Minus Query 251554 ACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAG 251613 || ||||| || ||||| || | ||||||||| | || || |||||| ||| |||| Sbjct 1783982 ACGCGGCGCTCAAAGAAGTTGGTCTTGCCCTCGATGGAAATGTTCTCCATAAAGGGGAAG 1783923 Query 251614 GGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCT-ACGAAGATGCGGTCTGCCAC 251672 ||||| ||||| ||||| |||| | ||| || ||| |||| || |||||| | || Sbjct 1783922 GGGTTGGTGGCGTTGTAGACCTTGTCGTAGCCGAG-GCTGACGAGGAGGCGGTCGGAGAC 1783864 Query 251673 AAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATAC-GACAAGGAATTG 251731 |||||| | |||| | ||| || ||||||||||| | | ||| || | | Sbjct 1783863 AAACTCAATGTACTCGCGCATGAGAGTGGAGTTCATGCCGAGGAGGGAGACG-GGCAGCG 1783805 Query 251732 CCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTG 251791 |||| | || |||| || | | || || ||| | || | | || | Sbjct 1783804 CCTCGGTCAAAAACTCCTGCTCAATCTCGACGGCGTCCATGATGATGCCAATGACGCGCT 1783745 Query 251792 CCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGAC 251851 || | | |||| || | |||| | ||| ||| ||| | |||| | |||||| | Sbjct 1783744 CCTTGGGCGGCTTCTTGTGCAGCATGGAGAACATGAGGCAGGCAAAGTCGCAGTGCAGGC 1783685 Query 251852 CCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCC 251911 |||||||||| ||||||| |||||||||| | |||||| ||||| | || || ||| Sbjct 1783684 CCTCGTCGCGGCTGATGAGCTCGTTGGACTGCGTCAGGCCGGGCATGAGGCCGCGCTTCT 1783625 Query 251912 TGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATG 251971 ||||||||||||| ||| || || || ||| | | ||||||||| | | | Sbjct 1783624 TGAGCCAGAAGATGGCGGCGAACGACCCGCTGAAGAAGATGCCCTCGACAGCGGCAAAGG 1783565 Query 251972 CAACAAGGCGCTCAGCAAACGA------CTTGTCCTGCGA-CAAGAACTTCTGTGCCCAT 252024 | || | |||||| ||||| || ||||| | ||| | || | | ||||| Sbjct 1783564 CGACGACGCGCTCCGCAAAGGAGGCCCGCTTGTGGT-CGATCCAGCGCAT---GGCCCAC 1783509 Query 252025 GCTGCCTT---CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGC 252081 | ||||| ||| || ||||| | || || | || | ||||| || | | Sbjct 1783508 TCGGCCTTGCGCTT---GACGGCGGGCAGCGTCTCAACGGCGTTGAAGAGCATGTGCTTC 1783452 Query 252082 TCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGAT 252141 || ||| | |||| || || | || || ||||||||||| || |||||| Sbjct 1783451 TCCTGCGGGTCGTTGATGTACGTGTCGATGAGCAGCGAGTACATCTCAGAGTGGATGTTC 1783392 Query 252142 TCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTG-ACTTC---CGT 252197 || | | |||||| | | ||||| ||||| || | || || || | | Sbjct 1783391 TCAATCATAATCTGGAAGCCGTAGAAGCAGCGCGC-CTCTGGCAGCTGCACCTCGCACAT 1783333 Query 252198 GGAAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAG 252257 | ||| | | | |||||| |||| ||||| |||||| | || |||||| | || Sbjct 1783332 G---AAGCGCTCGACGAGGTTCTCGTTCACAATGCCGTCGCTGGCGGCGAAGAAGGCGAG 1783276 Query 252258 AATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTC 252317 | | |||||| ||||| |||| ||| ||||| | | ||||||| | | | ||| Sbjct 1783275 GACGTGCTTGATAAAGTGCTGCTCCGTGTCCTTGAG---GCCGCGCCAGTGGTCGAGGTC 1783219 Query 252318 CTGATTCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 | ||| ||| || ||| | |||||||| | || || |||||||||||||| Sbjct 1783218 GCGCGACAGGTCAACCTCCTCCGCGGTCCAGAAGGAGGCGACGGCCTTCTTGTACAT 1783162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834771949514