Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq8 221 2e-52 seq4 104 4e-17 seq2 102 2e-16 seq30 91.5 3e-13 seq9 89.7 9e-13 seq10 87.8 3e-12 >seq8 Length=1951132 Score = 221 bits (244), Expect = 2e-52 Identities = 580/871 (67%), Gaps = 28/871 (3%) Strand=Plus/Minus Query 9927 TCGGCATTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGAC 9986 |||||| |||||| || |||||||||||| || |||||||| |||||||||| | Sbjct 1784018 TCGGCAGCCATGACACCGCTCTTCTGGTACTCGCTCACGCGGCGCTCAAAGAAGTTGGTC 1783959 Query 9987 TTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTG 10046 |||||||||| ||||||| |||||| ||| |||||||| |||| | |||| Sbjct 1783958 TTGCCCTCGATGGAAATGTTCTCCATAAAGGGGAAGGGGTTGGTGGCGTTGTAGACCTTG 1783899 Query 10047 GGGTAACCGAGTGCTG-TGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAG 10105 ||| ||||| |||| || | |||||| | || ||||| ||||||| || ||| || Sbjct 1783898 TCGTAGCCGAG-GCTGACGAGGAGGCGGTCGGAGACAAACTCAATGTACTCGCGCATGAG 1783840 Query 10106 GTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCG--CAAATGAAGTCCTTTTCG 10163 ||||||||||| | | | | ||| | || ||| |||| || |||| || Sbjct 1783839 AGTGGAGTTCATGCCGAGGAGGGAGACGGGCAGCGCCTCGGTCAAA--AACTCCTGCTCA 1783782 Query 10164 TTGGCGACCGCTTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGC 10223 | |||| || ||| || ||||| | || || || | |||| || | ||| Sbjct 1783781 ATCTCGACGGCGTCCATGATGATGCCAATGACGCGCTCCTTGGGCGGCTTCTTGTGCAGC 1783722 Query 10224 TTCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCG 10283 | || ||| ||| |||| | ||| |||||||||||||||||||||| |||| Sbjct 1783721 ATGGAGAACATGAGGCAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCG 1783662 Query 10284 TTGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAAC 10343 |||||| ||| ||||||||||| || || || |||||||| |||||| |||| Sbjct 1783661 TTGGACTGCGTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGGCGAAC 1783602 Query 10344 GACCCGGAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401 |||||| || |||||| ||||| || | ||||||||| |||||| || |||| Sbjct 1783601 GACCCGCTGA--AGAAGATGCCCTCGACAGCGGCAAAGGCGACGACGCGCTCCGCAAAGG 1783544 Query 10402 AG---CGGTCGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTT---CTTTCCCACGGCAG 10455 || || | | | | | | ||||||| | ||||| ||| ||||| | Sbjct 1783543 AGGCCCGCTTGTGGTCGATCCAGCGCATGGCCCACTCGGCCTTGCGCTT---GACGGCGG 1783487 Query 10456 GGATCGTCTCGATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCAT 10515 | | |||||| | || | ||||||| ||| ||| | ||| | || | | Sbjct 1783486 GCAGCGTCTCAACGGCGTTGAAGAGCATGTGCTTCTCCTGCGGGTCGTTGATGTACGTGT 1783427 Query 10516 CAAGGAGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGA 10575 | | |||||| ||||| ||| ||||| | ||||| | |||| | |||||| Sbjct 1783426 CGATGAGCAGCGAGTACATCTCAGAGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGA 1783367 Query 10576 ACATACGTGCCGAGGGGTCCGTGACTTCCTCG-GCA--AAGTTGTTGTTCAGGTTCTCCA 10632 | || ||| || | || ||||| || ||| | | |||||||| Sbjct 1783366 AGCAGCGCGCCTCTGGCAGC-TG--CACCTCGCACATGAAGCGCTCGACGAGGTTCTCGT 1783310 Query 10633 TCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCAT 10692 |||| ||||| |||||| | || |||||| |||||| ||||||||| ||||| |||| Sbjct 1783309 TCACAATGCCGTCGCTGGCGGCGAAGAAGGCGAGGACGTGCTTGATAAAGTGCTGCTCCG 1783250 Query 10693 CATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGG 10752 || || || | ||||||| | | || | || | ||||||||| ||| Sbjct 1783249 TGTCCTTGAG---GCCGCGCCAGTGGTCGAGGTCGCGCGACAGGTCAACCTCCTCCGCGG 1783193 Query 10753 TCCAGAAAGTGGCAACGGCCTTCTTGTACAT 10783 ||||||| | ||| ||||||||||||||||| Sbjct 1783192 TCCAGAAGGAGGCGACGGCCTTCTTGTACAT 1783162 >seq4 Length=2372320 Score = 104 bits (114), Expect = 4e-17 Identities = 339/515 (66%), Gaps = 19/515 (4%) Strand=Plus/Minus Query 31790 CTTCACGTT-CACGCTGTCCTTGTTGAGCACGTAAGGCATGCCCGTCTCGATCTGCGTGA 31848 |||| ||| ||||| |||||||| ||||| ||| || |||||||||| |||| | | Sbjct 2278757 CTTCTTGTTGCACGC-GTCCTTGTAGAGCATGTATGGGGTGCCCGTCTCCGTCTGGGCGT 2278699 Query 31849 TGATCATCGCATTCCAGACATCGCGCGCTTTGACGACTTTCTTCGCACGC---CCCTCGG 31905 || || ||| ||||| | | || ||| || ||||| | | ||||||| Sbjct 2278698 CGAGAATGGCAAACCAGAGCTTGGATGCC--GAC-ACCTTCTTGCGGCCCTTGCCCTCGG 2278642 Query 31906 ACTCGTAGCGAAGATACAGGTCCTCGTACTCCTTGCCAAAGGCATCGGTTAGACCGGGAC 31965 |||||| |||||| ||| |||| | ||| | | || | |||||||| | Sbjct 2278641 CCTCGTACTTCTCGTACAGGCGCTCAAACTCGTCGCCGTATGTGTCCGAGAGACCGGGGC 2278582 Query 31966 ACTCCTTGGGGTCGAAGAGCGACCATGCGACATCGGCCTCTACTCGCTTCATGAACAGGT 32025 |||| | ||| | ||||| ||| | | | |||||| || |||||||| ||||||| Sbjct 2278581 ACTCGTGCGGGCACATGAGCGTCCACTCTTCGTTGGCCTCAACGCGCTTCATAAACAGGT 2278522 Query 32026 CGTTCAGCCACATCGCGTAAAACAGATTCCTGGCGCGTTGGGTCTCCTCACC-CTGGT-T 32083 || || ||||| |||| | || || | | ||| || || ||||||| | | ||| | Sbjct 2278521 CGGGCACCCACAGCGCGAAGAAGAGGTCGCGGGCACGCTG---CTCCTCAACACCGGTGT 2278465 Query 32084 ACGTCGG-AGCAGCAGGAAGTCCATGATGTCGGGGTGGTGGGGCTCGAGGTACACGGCGA 32142 | || ||| || ||||| | |||||| | ||| ||||||||||||||||| | Sbjct 2278464 TCTTCTTCAGCTCGAGAAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTACACGGC-A 2278406 Query 32143 AAGATCCCTTGCGGC----GACCCCCCTGGTTTGCGTATGCAGATGTCGTGTCGTACACC 32198 ||| || || || || ||||||| |||| | || ||| | |||| Sbjct 2278405 AAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACACG 2278346 Query 32199 TTCAGCATGGGTACGATGCCATCAGACTCGCCATTGGTCCCCTGGATCTTGGAACCACGG 32258 ||||||||| |||| || | || | ||| ||||| || || | || || | | Sbjct 2278345 CGCAGCATGGGCACGAGCCCGTTCGAGTGGCCGTTGGTGCCGGCAATGTACGAGCCGCTG 2278286 Query 32259 CCGCGAATGTCGCTCAGGTGCAGGCCGATGCCGCC 32293 |||| |||| | || | ||||| |||||||| Sbjct 2278285 GCGCGGATGTTGTGCACGCTAAGGCCAATGCCGCC 2278251 >seq2 Length=2479747 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| || ||||| ||||||||| |||||||| ||| | | || || || Sbjct 85835 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGAGTCAGAAGGCTCGACCTCG 85776 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || |||||||||||||||||||| |||||||| Sbjct 85775 AGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 85732 >seq30 Length=789273 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 268403 GGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAG 268462 |||||||||||||||||||| ||||||||| | ||||||||||||||| |||||| Sbjct 182120 GGGCTCTCGTGGTTGAAGAGAATGCCGTTGTTGCAGTGCATGCCATATGCCTCGCGGTAG 182179 Query 268463 TTCACGACCGTCCAGTATGCAAACATCTTTGCAAC 268497 || || || ||||||| | ||||||| ||||| Sbjct 182180 TTGACAACAATCCAGTACCCGTACATCTTCGCAAC 182214 Score = 87.8 bits (96), Expect = 3e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 268652 CCATCCACGTCCGCTGTATACTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCG 268711 || || |||| | | |||||||| | ||| ||||| || |||| ||| |||||| ||| Sbjct 183031 CCGTCGACGTTCCCCGTATACTCAGCCATATCGAAGGAGACCTTGACGTGGCTCATGGCA 183090 Query 268712 CCCAGGTTATAAACCTCATCCGGTTTGACCTGCTG-CACGATCTTCACGAGGTTCGTTGA 268770 || ||||| || ||||||||||| || |||| ||| | |||||| | || ||| Sbjct 183091 CCGAGGTTGTACACCTCATCCGGCTTCACCT-CTGTGATGATCTTGATCAGACACGTGCT 183149 Query 268771 GTCGGTGAGGTCTCCGTAGTGCAACAC 268797 ||| || | ||| |||||||||| ||| Sbjct 183150 GTCCGTCAAGTCACCGTAGTGCAGCAC 183176 >seq9 Length=1890124 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| || ||||| ||||||||| |||||| | ||| | | || || || Sbjct 274679 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGAGTCGGAGGGCTCGACCTCG 274738 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || |||||||||||||| || || |||||||| Sbjct 274739 AGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 274782 >seq10 Length=1852485 Score = 87.8 bits (96), Expect = 3e-12 Identities = 264/402 (66%), Gaps = 8/402 (2%) Strand=Plus/Minus Query 176109 CCATTCACCAGGAGAAACGGGATGGTGGGAACATAGTATTCCGGTTCAATCCGGTCGCCG 176168 || |||||||| | | || | | |||| | || | || || |||||| | ||| Sbjct 1769485 CCGTTCACCAGCACCATGGGCAGGATGGGCGCGTAAAACTCTGGCTCAATCGTCTGCCCG 1769426 Query 176169 TCATCCTCGAGGTAGTTCAGCAGACGCTCGTCGGCCTTGTGGAAAATATCCCGGGTGTTG 176228 || ||||| |||| ||| ||||| ||||| ||| |||||| || | || | Sbjct 1769425 TCGTCCTCCAGGTGGTTGAGCAGGGCGTCGTCCGCCAAGTGGAAGATCTTGCGCGCCAGC 1769366 Query 176229 GGGGACAGTTGTGTGAAGATATACCT--AGCAGACGCACTGTCCTTGCCTCCGTGAAGGC 176286 || |||||| |||||||| || | ||| | | | | ||||||||| || |||| Sbjct 1769365 GGCGACAGTGAGGTGAAGATGTAACGCGAGCTGGC-CGC-GTCCTTGCCGCCCGCCAGGC 1769308 Query 176287 GGGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTT 176346 | | || || || || || || |||| |||| ||| || |||||| | | Sbjct 1769307 GCGTGCCAAACTGGCCAATGGGCAGCAGCAGGTTGAGGTTGTTGCTGCCCACGAACCGCT 1769248 Query 176347 GGGCCATTCCGACTATGGCGCCCTGGAGAGACGC--CTCGCCGTGGTGATAGCCGGCGTT 176404 | ||||| || || |||| ||| || || | | |||||||||||| ||| | | || Sbjct 1769247 GCGCCATGCCCACAATGGTGCC--GGCCAGGCTCATCTCGCCGTGGTGGTAGGCCGAGTG 1769190 Query 176405 CTCACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCTTGTACGAGGTTGCGCTTCAA 176464 ||| ||| ||||||| |||||| || ||||| || | ||| |||||||| || Sbjct 1769189 CTCCGAGACGTACCCGGCAAGCTGCGCCACCTTGATCTCGTCCTTGAGCTTGCGCTTGAA 1769130 Query 176465 CGCCGAGAACAGAATCTTCCGCTGCGAGGGCTTCAGACCATC 176506 ||||| || | ||| ||||| ||||| || || || Sbjct 1769129 GCAGGAGAAGAGCACCTTGCGCTGGCCCGGCTTGAGCCCGTC 1769088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620625876880