Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq8 390 2e-103 seq4 298 1e-75 >seq8 Length=1951132 Score = 390 bits (432), Expect = 2e-103 Identities = 604/850 (71%), Gaps = 17/850 (2%) Strand=Plus/Plus Query 42303 TGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCC 42362 |||||||||||||||||||| |||| ||||||||| |||||| |||||||| | Sbjct 1783156 TGGTCCATGTACAAGAAGGCCGTCGCCTCCTTCTGGACCGCGGAGGAGGTTGACCTGTCG 1783215 Query 42363 AAGGACACGGCCGGCTGG-GAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACAT 42421 ||| | | |||| | | | || || | || || || |||| || | Sbjct 1783216 CGCGACCTCGACCACTGGCGCGGC-CTCAAGGACACGGAGCAGCACTTTATCAAGCACGT 1783274 Query 42422 ACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCAT 42481 || ||||||||||||||| |||||||| || || |||||||| | | | ||||| Sbjct 1783275 CCTCGCCTTCTTCGCCGCCAGCGACGGCATTGTGAACGAGAACCTCGTCGAGCGCTTCAT 1783334 Query 42482 GAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 | ||||||||| ||||||||||||||||||||||||||||| || ||||| Sbjct 1783335 GTGCGAGGTGCAGCTGCCAGAGGCGCGCTGCTTCTACGGCTTCCAGATTATGATTGAGAA 1783394 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGA 42598 | | ||||||||| ||||| | ||||||| ||||||||||| || || || Sbjct 1783395 CATCCACTCTGAGATGTACTCG---CTGCTCATCGACACGTACATCAACGACCCGCAGGA 1783451 Query 42599 GCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658 | || ||| ||||| ||| | |||||| ||||| | ||||| ||||| || || Sbjct 1783452 GAAGCACATGCTCTTCAACGCCGTTGAGACGCTGCCCGCCGTCAAGCGCAAGGCCGAGTG 1783511 Query 42659 GGCGCTCAACTGGATCGAG-AGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 ||| | ||||||||| | || || | || | ||| | | || |||||| Sbjct 1783512 GGCCATGCGCTGGATCGACCACAAGCGG-GCCTCCTTTGCGGAGCGCGTCGTCGCCTTTG 1783570 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG- 42776 |||| |||||||||||||||||| || | |||||| ||||||||||||||||| || Sbjct 1783571 CCGCTGTCGAGGGCATCTTCTTCAGCGGGTCGTTCGCCGCCATCTTCTGGCTCAAGAAGC 1783630 Query 42777 AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 || || |||||||| || || || ||||| ||||||||| | |||||||| ||| Sbjct 1783631 GCGGCCTC-ATGCCCGGCCTGACGCAGTCCAACGAGCTCATCAGCCGCGACGAGGGCCTG 1783689 Query 42837 CATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAG 42896 || | ||||||||||||||| ||||||| | | | || | ||||| | |||||| Sbjct 1783690 CACTGCGACTTTGCCTGCCTCATGTTCTCCATGCTGCACA---AGAAGCCGCCCAAGGAG 1783746 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956 || ||| | |||||||| ||| ||||| ||||| ||| ||||||| | || || || Sbjct 1783747 CGCGTCATTGGCATCATCATGGACGCCGTCGAGATTGAGCAGGAGTTTTTGACCGAGGCG 1783806 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016 |||||||| ||||| ||||||||||| | |||||| || ||||||| ||| ||| Sbjct 1783807 CTGCCCGTCTCCCTCCTCGGCATGAACTCCACTCTCATGCGCGAGTACATTGAGTTTGTC 1783866 Query 43017 GCCGACCATCTCCTGTGCCAG-ATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTT 43075 |||||| ||||| | ||| | || | | |||||||| | | |||||| Sbjct 1783867 TCCGACCGCCTCCT-CGTCAGCCTCGGCTACGACAAGGTCTACAACGCCACCAACCCCTT 1783925 Query 43076 CGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGC 43135 | ||||||||||||||| || | ||||||||||||||||| || ||| ||||| Sbjct 1783926 CCCCTTTATGGAGAACATTTCCATCGAGGGCAAGACCAACTTCTTTGAGCGCCGCGTGAG 1783985 Query 43136 CGACTACCAG 43145 ||| |||||| Sbjct 1783986 CGAGTACCAG 1783995 >seq4 Length=2372320 Score = 298 bits (330), Expect = 1e-75 Identities = 444/630 (70%), Gaps = 0/630 (0%) Strand=Plus/Minus Query 244792 GTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGAC 244851 |||||| |||||||||||||||||| | || || ||||| ||||||| |||| | Sbjct 2278751 GTTGCACGCGTCCTTGTAGAGCATGTATGGGGTGCCCGTCTCCGTCTGGGCGTCGAGAAT 2278692 Query 244852 GCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCG 244911 | |||||| | ||| ||| || |||| |||||||||| |||||||| Sbjct 2278691 GGCAAACCAGAGCTTGGATGCCGACACCTTCTTGCGGCCCTTGCCCTCGGCCTCGTACTT 2278632 Query 244912 GGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGG 244971 ||||||| ||| |||||| ||| | || || ||||||||| ||| Sbjct 2278631 CTCGTACAGGCGCTCAAACTCGTCGCCGTATGTGTCCGAGAGACCGGGGCACTCGTGCGG 2278572 Query 244972 GCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCA 245031 ||||||||| ||||||| || | ||| || | || ||| || |||||||| | ||| Sbjct 2278571 GCACATGAGCGTCCACTCTTCGTTGGCCTCAACGCGCTTCATAAACAGGTCGGGCACCCA 2278512 Query 245032 GAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTC 245091 || || ||||||||| | || | |||||| || || ||||||||| ||||||| Sbjct 2278511 CAGCGCGAAGAAGAGGTCGCGGGCACGCTGCTCCTCAACACCGGTGTTCTTCTTCAGCTC 2278452 Query 245092 CAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCG 245151 | ||||||||||| ||| ||||||| ||||| | ||| || || | |||||||||||| Sbjct 2278451 GAGAAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTACACGGCAAAGGCGCCGGGCCG 2278392 Query 245152 CTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCAC 245211 ||||||||| |||||||| || | | | |||||| | |||||| | ||||| Sbjct 2278391 CTTGTTGCCGCCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATGGGCAC 2278332 Query 245212 TATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCT 245271 | ||||| ||||||||||||||||| ||||| | ||| || | | || |||| Sbjct 2278331 GAGCCCGTTCGAGTGGCCGTTGGTGCCGGCAATGTACGAGCCGCTGGCGCGGATGTTGTG 2278272 Query 245272 GATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTC 245331 | | | ||| | |||||||| ||||||||| | ||| || |||||| || || Sbjct 2278271 CACGCTAAGGCCAATGCCGCCGGCTGTCTTGGAGATCATGGCACACGTCTTGAGCGTATC 2278212 Query 245332 TGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGG 245391 |||||||| |||||||| ||||||| |||| || |||||| | |||||| || Sbjct 2278211 GTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGGAGGAAGCAGCTGCTCAGCTGCGG 2278152 Query 245392 CTTGGGGCTGCACGAGTTGAACAGAGTGGG 245421 |||| ||| ||||||||||| || || Sbjct 2278151 GATGGGCGTGCCAGAGTTGAACAGCGTTGG 2278122 Score = 224 bits (248), Expect = 2e-53 Identities = 371/530 (70%), Gaps = 19/530 (4%) Strand=Plus/Minus Query 244074 CCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGA 244133 ||| || || |||| ||||||||||||| ||||| || || |||||||||||| ||||| Sbjct 2279852 CCTTGAGCAAGTGCTTGTTCACCACCTGGAACTCGCCAGAGAGCACGCGGCGCGAGTAGA 2279793 Query 244134 GGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAG 244193 |||||| || ||||| || ||| ||||||| || ||||| || ||| ||| | Sbjct 2279792 TGTTGCTCGTGTAGGGCTCAATCGACTCGTTGTTGCCGAGAATCTGGGCAGTGGACGCGG 2279733 Query 244194 TCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGA 244253 | |||||||||| |||||||| ||| | | ||||| | ||| | ||| | | Sbjct 2279732 TGGGCATGGGCGCAACCAGCAGCGAGTTGCGAATGCCGTCCTTCTTCACGCGCTCGCGAA 2279673 Query 244254 GCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACT 244313 || | ||| ||||||| | ||| | | | || | | ||||||||||||||| Sbjct 2279672 GCGACTCCCAATCCCACAGGTCCGTGGGCT--TCACAT-------CCCACATGTCAAACT 2279622 Query 244314 GCAGCAGCCCCTTGCTGACG-GGGCT-GCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTG 244371 | || | |||| | || | |||| |||||| | ||| ||| || || || Sbjct 2279621 GAAGAATGCCCT--CAGAGGTGGGCGAGCCCTCAAAAGTCTCGTATGGCCCCTCAACGGA 2279564 Query 244372 GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTT 244431 || | || | | ||||||||| ||| ||||||||||||||| ||| | ||| Sbjct 2279563 CGCAATCTCCGTGGAGGCTTCGAGGGCGCCGTGGTAGATGGTCTCGAAAATCTTGCGGTT 2279504 Query 244432 CATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAG 244491 || ||||| |||| | ||| | ||||| | | ||||| || || ||||||| || Sbjct 2279503 CACCTCGCGTGCCTCGTCGCTGTCAAAGGGAAGACGCATCAGGATAAACGCGTCGGCAAG 2279444 Query 244492 TCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA---GCGCATGGCTTCGGG 244548 ||||||||||| ||||| ||||| | ||| ||| ||||||| |||| || || || Sbjct 2279443 GCCCTGCACGCCAATGCCAATGGGGCGGTGGCGCATGTTGGACTTGCGC---GCCTCTGG 2279387 Query 244549 CACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA 244598 || ||||| ||||| |||||| | ||||||||||||||| |||| || Sbjct 2279386 GACAGGGTAGTAGTTGATGTCGATAATCTTGTTGAGGTTGCGCGTGAGCA 2279337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337382147040