Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq10 96.9 3e-15 seq2 91.5 1e-13 >seq10 Length=1852485 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||| || |||||||||||||||||||| |||||||| || || Sbjct 1590789 CCACCGCGCAGGCGAAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTC-GCT 1590847 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||||||||| || || |||||||| || ||| Sbjct 1590848 CAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATAAGCCGCTGCTGGTCAGGCGG 1590907 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA-TCAGTAGATTCGC 34078 | || ||| |||||| || || ||| | | |||| | | |||| | || Sbjct 1590908 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTCTCAATCGAGTCAGATGGCTCAA 1590966 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||| || || || || || || || ||||||||||| ||||| Sbjct 1590967 CCTCAAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1591015 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||| || |||||||||||||||||||| |||||||| || || Sbjct 1590333 CCACCGCGCAGGCGCAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTC-GCT 1590391 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||| ||||| || || |||||||| || ||| Sbjct 1590392 CAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGG 1590451 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 1590452 GATGCCCTCCTTGTCC 1590467 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||| || |||||||||||||||||||| |||||||| || || Sbjct 1590561 CCACCGCGCAGGCGAAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTC-GCT 1590619 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||| ||||| || || |||||||| || ||| Sbjct 1590620 CAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGG 1590679 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 1590680 GATGCCCTCCTTGTCC 1590695 >seq2 Length=2479747 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/124 (78%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 33892 CAATCGAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTG 33951 |||| || ||| || | ||| |||||||| || || || ||||||||||||||||||||| Sbjct 86931 CAAT-GACACCACCGCGCAGGCGCAGCACAAGGTGGAGGGTGCTCTCCTTCTGAATGTTG 86873 Query 33952 TAATCTGCCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTG 34010 || || || | || || |||| |||| |||||||| || || || || |||||||| Sbjct 86872 TAGTC-GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTG 86814 Query 34011 ATCC 34014 |||| Sbjct 86813 ATCC 86810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397061654763508