Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4 158 1e-33 seq10 125 9e-24 >seq4 Length=2372320 Score = 158 bits (174), Expect = 1e-33 Identities = 397/596 (67%), Gaps = 8/596 (1%) Strand=Plus/Minus Query 113844 GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTAT 113903 ||||||| | || | ||||| ||||| |||| || |||| | | ||||| | Sbjct 2279894 GATCCTTGACCTCATCGGACCACAGACCCATCTCAACAAGGTCCTTGAGCAAGTGCTTGT 2279835 Query 113904 TGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCT 113963 | || || ||||| || | ||| ||| | | ||||| ||| ||||||| |||| Sbjct 2279834 TCACCACCTGGAACTCGCCAGAGAGCACGCGGCGCGAGTAGATGTTGCTCGTGTAGGGCT 2279775 Query 113964 CAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGA 114023 ||| |||| ||||| || | || ||||| ||||| || ||||||||||| || | | Sbjct 2279774 CAATCGACTCGTTGTTGCCGAGAATCTGGGCAGTGGACGCGGTGGGCATGGGCGCAACCA 2279715 Query 114024 GAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGT 114083 | || ||| || | || | | | | | ||| || || | ||||| || | Sbjct 2279714 GCAGCGAGTTGCGAATGCCGTCCTTCTTCACGCGCTCGCGAAGCGACTCCCAATCCCACA 2279655 Query 114084 TGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATC 114143 | | | | || | | | |||||| |||||||| || || || | |||| ||||| | Sbjct 2279654 GGTCCGTGGGCTTCACATCCCACATGTCAAACTGAAGAATGCCCTCAGAGGTGGGCGAGC 2279595 Query 114144 CCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTG 114203 ||||||| ||||||||||| |||||||| ||| | || | | || |||||||| Sbjct 2279594 CCTCAAAAGTCTCGTATGGCCCCTCAACGGACGCAATCTCCGTGGAGGCTTCGAGGGCGC 2279535 Query 114204 CGTGATACATTGTCTCAAAAATGCGAGC-ATTCA--TTGCCTTGGCCTCGTCGGAATCAA 114260 |||| || || ||||| ||||| | || |||| | || | ||||||||| |||| Sbjct 2279534 CGTGGTAGATGGTCTCGAAAAT-CTTGCGGTTCACCTCGCGT--GCCTCGTCGCTGTCAA 2279478 Query 114261 ACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGC 114320 | | || || || ||||| | || || || || || || || | |||||| |||| Sbjct 2279477 AGGGAAGACGCATCAGGATAAACGCGTCGGCAAGGCCCTGCACGCCAATGCCAATGGGGC 2279418 Query 114321 GATGTCTCATATTAGACTTTCGAGCGGTCT-CCACGGGATAAAAATTCCTATCGATAACC 114379 | || | ||| || ||||| || || ||| || || || | || | ||||||| | Sbjct 2279417 GGTGGCGCATGTTGGACTTGCGCGC-CTCTGGGACAGGGTAGTAGTTGATGTCGATAATC 2279359 Query 114380 CTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA 114435 | || || || |||| ||||| || | || || ||||| | ||||||||| Sbjct 2279358 TTGTTGAGGTTGCGCGTGAGCACCTTGGTAACCTCGTGCAGCTTCTTGTAATCAAA 2279303 Score = 136 bits (150), Expect = 5e-27 Identities = 443/682 (65%), Gaps = 17/682 (2%) Strand=Plus/Minus Query 114582 TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA 114641 |||| ||||| |||||||| ||||||||||| || ||||||||||| |||| | ||||| Sbjct 2278752 TGTTGCACGCGTCCTTGTAGAGCATGTATGGGGTGCCCGTCTCCGTCTGGGCGTCGAGAA 2278693 Query 114642 TAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACT 114701 | || ||||| | || || | ||| | | | | ||||| ||||||||| Sbjct 2278692 TGGCAAACCAGAGCTTGGATGCCGACACCTTCTTGCGGCCCTTGCCCTCGGCCTCGTACT 2278633 Query 114702 TTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTG 114761 | ||| ||| |||||||| || || | || ||||| || || || | | Sbjct 2278632 TCTCGTACAGGCGCTCAAACTCGTCGCCGTATGTGTCCGAGAGACCGGGGCACTCGTGCG 2278573 Query 114762 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCC 114821 |||| | ||| | ||| | | ||||||| |||||||| || ||||| || | || Sbjct 2278572 GGCACATGAGCGTCCACTCTTCGTTGGCCTCAACGCGCTTCATAAACAGGTCGGGCACCC 2278513 Query 114822 AGAGAGCTGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAA 114879 | || || ||||||| || || || ||| || ||| | || || || Sbjct 2278512 ACAGCGCGAAGAAGAGGTCGCG--GGCACGCTGCTCCTCAACACCGGTGTTCTTCTTCAG 2278455 Query 114880 CTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC------CGCGATTGA 114933 ||| | |||||| | ||| || ||||||||||| || |||||||| ||| | Sbjct 2278454 CTCGAGAAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTACACGGCAAAGGCGCCGGG 2278395 Query 114934 CCCCTTACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCAT 114993 || ||| | | || |||||| || || | ||| ||| || || ||||| ||||| Sbjct 2278394 CCGCTT--GTTG-CCGCCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCAT 2278338 Query 114994 TGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTG 115051 || | || || | || ||||| || || || || |||||| | |||| | | Sbjct 2278337 GGGCACGAGCCCGTTCGAGTGGCCGTTGGTGCCGGCAATGTACGAGCC--GCTGGCGCGG 2278280 Query 115052 ACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTG 115111 | | || | | | ||||| || || || ||| ||||| || ||| | || Sbjct 2278279 ATGTTGTGCACGCTAAGGCCAATGCCGCCGGCTGTCTTGGAGATCATGGCACACGTCTTG 2278220 Query 115112 AGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGAC 115171 || | ||||||| || ||||| ||| |||| | | || ||||||||||| | Sbjct 2278219 AGCGTATCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGGAGGAAGCAGCTGCTC 2278160 Query 115172 ATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT 115231 | || || | || || |||| |||||| || ||||| | |||||| |||| | || Sbjct 2278159 AGCTGCGGGATGGGCGTGCCAGAGTTGAACAGCGTTGGCGACGCGTGCGTGAAAAAGCCC 2278100 Query 115232 TGGGACATCTTATCGTAGGTCT 115253 | |||||| | | ||| |||| Sbjct 2278099 TCGGACATGTAGTTGTACGTCT 2278078 >seq10 Length=1852485 Score = 125 bits (138), Expect = 9e-24 Identities = 296/444 (67%), Gaps = 6/444 (1%) Strand=Plus/Minus Query 171728 CCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 171787 || ||||| || || ||| |||||||||| || ||||| || || | ||| || || Sbjct 1769506 CCCGTGCCGATGCCGTCGCTGCCGTTCACCAGCACCATGGGCAGGATGGGCGCGTAAAAC 1769447 Query 171788 TCTGGTTCAATCGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCGGA 171847 ||||| ||||||| |||| || || |||| | |||||||| || ||||||| | Sbjct 1769446 TCTGGCTCAATCGTCTGCCCGTCGTCCTCCAGGTGGTTGAGCAGGGCGTCGTCCGCCAAG 1769387 Query 171848 TCAAAGATTTTACGAGCATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGACGCA 171907 | ||||| || || || | | ||| ||||||||||| | || | ||| Sbjct 1769386 TGGAAGATCTTGCGCGCCAGCGGCGACAGTGAGGTGAAGATGTAACGCGAGCTGGCCGCG 1769327 Query 171908 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATTG 171967 || ||||| ||| || ||||| ||||| || ||| || || || |||| ||| Sbjct 1769326 TCCTTGCCGCCCGCCAGGCGCGTGCCAAACTGGCCAATGGGCAGCAGCAGGTTGAGGTTG 1769267 Query 171968 TTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCG 172027 || |||| | | | |||| ||||| || | || ||| | || ||| Sbjct 1769266 TTGCTGCCCACGAACCGCTGCGCCATGCCCACAATGGTGCCGGCCAGGCTCATCTCGCCG 1769207 Query 172028 TGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCATCC 172087 || ||||||||||| | |||| ||| ||| | || | ||| |||||||| ||||| ||| Sbjct 1769206 TGGTGGTAGGCCGAGTGCTCCGAGACGTACCCGGCAAGCTGCGCCACCTTGATCTCGTCC 1769147 Query 172088 TTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTCG 172147 ||||| || | |||||| | | | ||||| | ||| |||||||| |||| Sbjct 1769146 TTGAGCTTGCGCTTGAAGCAGGAGAAGAGCACCTTGCGCTGGCCCGGCTTGAGCCCGT-- 1769089 Query 172148 GCCATG-TGC--GCGATGGAACGC 172168 ||||| ||| | |||||| ||| Sbjct 1769088 -CCATGATGCTGGGGATGGACCGC 1769066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597352450094320