Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq10 118 1e-21 >seq10 Length=1852485 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||| | || | ||||||||||| || || ||||| || ||| || || || Sbjct 1590345 CGCAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 1590404 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| ||||| || ||||| ||||||||||| | || | || ||||||| Sbjct 1590405 TCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 1590464 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || |||| || | | || ||| | || || || | |||||| Sbjct 1590465 TCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAACCTCAAGTGTGATG 1590524 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || |||||||| |||||||| ||||| Sbjct 1590525 GTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1590559 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| || || ||||| || ||| || || |||| || |||||||| ||| Sbjct 1590591 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCA 1590650 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131 || || ||||| ||||||||||| | || | || |||||||||| ||| || ||| Sbjct 1590651 GCAAAGATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 1590710 Query 42132 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 42191 | || | | || ||| | || || || | |||||||| ||||| || |||||| Sbjct 1590711 ACGTTCTCAATCGAGTCAGATGGCTCAACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTC 1590770 Query 42192 TTTACAAAGATTTGCAT 42208 || |||||||| ||||| Sbjct 1590771 TTCACAAAGATCTGCAT 1590787 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| || || ||||| || ||| || || |||| || |||||||| || Sbjct 1590819 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCG 1590878 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131 || || || || ||||||||||| | || | || |||||||||| ||| || ||| Sbjct 1590879 GCAAAGATAAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 1590938 Query 42132 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 42191 | || | | || ||| | || || || | ||||||||| ||||| || |||||| Sbjct 1590939 ACGTTCTCAATCGAGTCAGATGGCTCAACCTCAAGCGTGATGGTCTTGCCAGTCAGCGTC 1590998 Query 42192 TTTACAAAGATTTGCAT 42208 || |||||||| ||||| Sbjct 1590999 TTCACAAAGATCTGCAT 1591015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543211754315360