Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq4 185 9e-42 >seq4 Length=2372320 Score = 185 bits (204), Expect = 9e-42 Identities = 394/585 (67%), Gaps = 5/585 (1%) Strand=Plus/Plus Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788 ||||| |||| | | ||||||| |||| |||||| ||||| |||||| || || ||| Sbjct 2279348 AACCTCAACAAGATTATCGACATCAACTACTACCCTGTCCCAGAGGCGCGCAAGTCCAAC 2279407 Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848 || || || ||||| ||||| ||||| ||||| | || |||||| | | ||||| Sbjct 2279408 ATGCGCCACCGCCCCATTGGCATTGGCGTGCAGGGCCTTGCCGACGCGTTTATCCTGATG 2279467 Query 94849 CGTCTGCCCTACGACTCTGTCGACGCG-GCGGGTTTGAATTTGAACATATTCGAAAGCAT 94907 ||||| |||| ||| | ||| || ||| | | ||| || || ||||| | ||| Sbjct 2279468 CGTCTTCCCTTTGACAGCGACGAGGCACGCGAGGT-GAACCGCAAGATTTTCGAGACCAT 2279526 Query 94908 TTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGA 94967 || |||| ||| | || ||| | | || || | | |||||| |||| Sbjct 2279527 CTACCACGGCGCCCTCGAAGCCTCCACGGAGATTGCG---TCCGTTGAGGGGCCATACGA 2279583 Query 94968 ATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAA 95027 | || || |||||| |||||||| ||||||| ||| | |||| |||||| Sbjct 2279584 GACTTTTGAGGGCTCGCCCACCTCTGAGGGCATTCTTCAGTTTGACATGTGGGATGTGAA 2279643 Query 95028 GCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAA 95087 |||| ||| |||| || ||||| | || |||| || | || |||| | Sbjct 2279644 GCCCACGGACCTGTGGGATTGGGAGTCGCTTCGCGAGCGCGTGAAGAAGGACGGCATTCG 2279703 Query 95088 AAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAA 95147 ||| ||||||| || || ||||||||||| || ||||| || ||||| || |||||||| Sbjct 2279704 CAACTCGCTGCTGGTTGCGCCCATGCCCACCGCGTCCACTGCCCAGATTCTCGGCAACAA 2279763 Query 95148 CGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATT 95207 ||||||| | || |||| ||| |||| | ||| | || |||||| | || || || Sbjct 2279764 CGAGTCGATTGAGCCCTACACGAGCAACATCTACTCGCGCCGCGTGCTCTCTGGCGAGTT 2279823 Query 95208 CCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAA 95267 || || | ||||||||| | || |||||| ||||| ||||| || | Sbjct 2279824 CCAGGTGGTGAACAAGCACTTGCTCAAGGACCTTGTTGAGATGGGTCTGTGGTCCGATGA 2279883 Query 95268 GGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT 95312 ||||||| | || | | | | |||||||||| ||||||| || Sbjct 2279884 GGTCAAGGATCAGATTATCCTCAACAACGGCTCCATCCAGAAGAT 2279928 Score = 172 bits (190), Expect = 5e-38 Identities = 294/424 (69%), Gaps = 2/424 (0%) Strand=Plus/Plus Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957 || || ||||||||| | || || || | || ||| || || ||||| | || Sbjct 2278122 CCAACGCTGTTCAACTCTGGCACGCCCATCCCGCAGCTGAGCAGCTGCTTCCTCCTCACC 2278181 Query 93958 AACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCA 94017 | |||| |||| |||| || || | ||| | |||||| ||||| | ||||| Sbjct 2278182 ATGAAGGACGACAGCATCGAGGGCATCTACGATACGCTCAAGACGTGTGCCATGATCTCC 2278241 Query 94018 AAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC 94077 || || || || || || | || || ||| || | || ||||| || || ||||| Sbjct 2278242 AAGACAGCCGGCGGCATTGGCCTTAGCGTGCACAACATCCGCGCCAGCGGCTCGTACATT 2278301 Query 94078 CGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCG 94137 ||| ||||| ||| ||| ||||| ||||| || ||||| || || ||||||||| || Sbjct 2278302 GCCGGCACCAACGGCCACTCGAACGGGCTCGTGCCCATGCTGCGCGTGTTCAACAACACG 2278361 Query 94138 GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAG 94197 ||||||||||| |||||||| || | | || || | || || || || |||||| Sbjct 2278362 GCGCGCTACGTCGACCAGGGCGGCAACAAGCGGCCCGGCGCCTTTGCCGTGTACCTCGAG 2278421 Query 94198 CCCTGGCACGCGGACGT-GCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCT 94256 || |||||||| ||| | | ||||| |||| ||| |||||| ||| || Sbjct 2278422 CCGTGGCACGCAGACATCTTTGACTTTC-TCGAGCTGAAGAAGAACACCGGTGTTGAGGA 2278480 Query 94257 GGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGT 94316 | || | ||| | |||||||||| ||| || |||||||| ||||| |||||||| ||||| Sbjct 2278481 GCAGCGTGCCCGCGACCTCTTCTTCGCGCTGTGGGTGCCCGACCTGTTTATGAAGCGCGT 2278540 Query 94317 CGAG 94320 ||| Sbjct 2278541 TGAG 2278544 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 93726 CTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCCGA 93785 ||||| |||||| || || ||| |||||||| || |||||| | |||| |||| |||| Sbjct 2277786 CTTTGGCTTCAAGACGCTTGAGCGCTCGTACCTGCTGAAGATGAACGGCAAGGTTGCCGA 2277845 Query 93786 GCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 ||| || || || || | |||||||||||||| || || |||||| | ||| Sbjct 2277846 GCGCCCCCAGCACATGTTCATGCGCGTCGCCATTGGCATGCACGGCGAAGAC 2277897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722247657840