Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4 233 2e-56 seq8 170 2e-37 seq10 98.7 1e-15 >seq4 Length=2372320 Score = 233 bits (258), Expect = 2e-56 Identities = 334/466 (72%), Gaps = 11/466 (2%) Strand=Plus/Minus Query 153812 GCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAG 153871 ||||||| |||||| ||||||||| |||||||||||||||||||| ||| | ||| Sbjct 2278649 GCCCTCGGCCTCGTACTTCTCGTACAGGCGCTCAAACTCGTCGCCGTATGTGTCCGAGAG 2278590 Query 153872 GCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCAT 153931 ||||| |||| ||||| ||||| |||| |||| |||| ||| | ||||| ||| Sbjct 2278589 ACCGGGGCACTCGTGCGGGCACATGAGCGTCCACTCTTCGTTGGCCTCAACGCGCTTCAT 2278530 Query 153932 GAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGC--GCGCCTTGCAATCCTCCGCG 153989 ||||| || |||||||| |||||| | | |||||||| || | ||| ||||| | Sbjct 2278529 AAACAGGTCGGGCACCCACAGCGCGAAGAAGAGGTCGCGGGCACGCTGC--TCCTCAACA 2278472 Query 153990 CCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAG 154049 || |||| ||||| | ||| | | | ||||||| |||||||| || || | ||| Sbjct 2278471 CCGGTGTTCTTCTTCAGCTCGAGAAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTAC 2278412 Query 154050 ACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTG 154106 ||||| | ||| || ||| || |||||||| ||||||| |||| || | |||||| Sbjct 2278411 ACGGCAAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCCGTGTTGTTG 2278352 Query 154107 AAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTG 154166 || ||||||| |||||| | || ||| | | | ||||||||| || | | Sbjct 2278351 AACACGCGCAGCATGGGCACGAGCCCGTTCGAGTGGCCGTTGGTGCCGGCAATGTACGAG 2278292 Query 154167 CCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCA 154226 |||| |||||| | | |||||| ||| ||||||||||||| | ||| || || || Sbjct 2278291 CCGCTGGCGCGGATGTTGTGCACGCTAAGGCCAATGCCGCCGGCTGTCTTGGAGAT--CA 2278234 Query 154227 GCGCAGTCGCC--CAGCGTCCTGTAGATGCCGTCGATGCTATCGTC 154270 ||| || | ||||| ||||||||| |||||||| ||||| Sbjct 2278233 TGGCACACGTCTTGAGCGTATCGTAGATGCCCTCGATGCTGTCGTC 2278188 >seq8 Length=1951132 Score = 170 bits (188), Expect = 2e-37 Identities = 501/751 (67%), Gaps = 37/751 (5%) Strand=Plus/Plus Query 52104 TTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGAACATTAACCTC 52163 |||||||||||||| | || |||||||||||| ||| |||| |||||| |||||| Sbjct 1783261 TTTATCAAGCACGTCCTCGCCTTCTTCGCCGCCAGCGACGGCATTGTGAACGAGAACCTC 1783320 Query 52164 ATCGAG---TACATGCAGCGGAACGTTCCGGAACTCGAGGCGCAATACTTTTATAATTTG 52220 ||||| | |||| ||| | || | | | ||||||| | ||| || || Sbjct 1783321 GTCGAGCGCTTCATGT-GCG--AGGTGCAGCTGCCAGAGGCGCGCTGCTTCTACGGCTTC 1783377 Query 52221 CAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTGAGCAGCTGATA 52280 || | | || ||| | | ||| | ||||||||| |||||||| || | || Sbjct 1783378 CAGATTATGATTGAGAACATCCACTCTGAGATGTACTCGCTGCTCATCGACACGTACATC 1783437 Query 52281 AAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACG-TGCCGTGCGTT-- 52337 || || ||| ||| ||| ||| | || || | ||| ||| |||| ||| Sbjct 1783438 AACGACCCGCAGGAGAAGCACATGCTCTTCAACGCCGTTGAG-ACGCTGCCCGCCGTCAA 1783496 Query 52338 -CGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGA 52396 ||||| ||| ||||||| ||| |||||||| | | ||| | | || || Sbjct 1783497 GCGCAA---GGCCGAGTGGGCCATGCGCTGGATCGACCACAAGCGGGCCTCCTTTGCGGA 1783553 Query 52397 GCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCAT 52456 |||| | || ||||| ||| ||||||||| | || || ||| || |||||||| Sbjct 1783554 GCGCGTCGTCGCCTTTGCCGCTGTCGAGGGCATCTTCTTCAGCGGGTCGTTCGCCGCCAT 1783613 Query 52457 CTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAG--CAACGAGTTGATA 52514 ||| | | || | | ||| | ||||||||||||||| ||| ||||||| | || Sbjct 1783614 CTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGACG--CAGTCCAACGAGCTCATC 1783671 Query 52515 TCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACTACAAGACGCGCGTG 52571 |||||||| || |||||| |||||||| |||||| | || || | || | | Sbjct 1783672 AGCCGCGACGAGGGCCTGCACTGCGACTTTGCCTGCCTCATGTTCTCCATGCTGCACAAG 1783731 Query 52572 A--CCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCG 52629 | ||| || ||| | || || | |||| ||| ||| || || | || | Sbjct 1783732 AAGCCGCCCAA--GGAG-----CGCG-TCATTGGCATCATCATGGACGCCGTCGAGATTG 1783783 Query 52630 AAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTC-C 52688 | |||||||||| || | |||||||| ||| || || ||||||||| | || || | Sbjct 1783784 AGCAGGAGTTTTTGACCGAGGCGCTGCCCGTCTCCCTCCTCGGCATGAACTC-CACTCTC 1783842 Query 52689 ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC-TCGGGCA-GCCAA 52746 ||| |||||||||| |||||||| | || || || | || |||| |||| | | ||| Sbjct 1783843 ATGCGCGAGTACATTGAGTTTGTCTCCGACCGCCTCCTCGT-CAGCCTCGGCTACGACAA 1783901 Query 52747 AGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGA 52806 || || |||||| ||| || || |||||| | |||||||| | |||||||||| Sbjct 1783902 GGT-CTACAACGCCACCAACCCCTTCCCCTTTATGGAGAACATTTCCATCGAGGGCAAGA 1783960 Query 52807 CCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||| || ||| || || ||||||| Sbjct 1783961 CCAACTTCTTTGAGCGCCGCGTGAGCGAGTA 1783991 >seq10 Length=1852485 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || |||||| || || || |||| | | Sbjct 1590824 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAA 1590883 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || ||||| ||||| || || || || || ||||| ||| || || | | Sbjct 1590884 GATAAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 1590943 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | | ||| | | ||| ||||| | ||| | || || |||||||| || || || Sbjct 1590944 CTCAATCGAGTCAGATGGCTCAACCTCAAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 1591003 Query 138603 AAAAATCTGCATGG 138616 ||| |||||||||| Sbjct 1591004 AAAGATCTGCATGG 1591017 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || |||||| || || || || | | | Sbjct 1590368 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 1590427 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || ||||| ||||| || || || || || ||||| ||| || || | | Sbjct 1590428 GATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 1590487 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | | ||| | | ||| ||||| | || | || || |||||||| || || || Sbjct 1590488 CTCAATCGAGTCAGATGGCTCAACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCAC 1590547 Query 138603 AAAAATCTGCATG 138615 ||| ||||||||| Sbjct 1590548 AAAGATCTGCATG 1590560 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || |||||| || || || || | | | Sbjct 1590596 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 1590655 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || ||||| ||||| || || || || || ||||| ||| || || | | Sbjct 1590656 GATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 1590715 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | | ||| | | ||| ||||| | || | || || |||||||| || || || Sbjct 1590716 CTCAATCGAGTCAGATGGCTCAACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCAC 1590775 Query 138603 AAAAATCTGCATG 138615 ||| ||||||||| Sbjct 1590776 AAAGATCTGCATG 1590788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261444694880