Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq8 140 3e-28 seq4 111 1e-19 seq10 105 6e-18 >seq8 Length=1951132 Score = 140 bits (154), Expect = 3e-28 Identities = 482/737 (65%), Gaps = 45/737 (6%) Strand=Plus/Plus Query 46863 GCCTTCTTTGCCGCCGCCGACAGCATAGTCAACATCAACATCATCGAGCACATGCAGCGC 46922 |||||||| |||||| |||| |||| || ||| ||| || |||||| | | | || Sbjct 1783279 GCCTTCTTCGCCGCCAGCGACGGCATTGTGAACGAGAACCTCGTCGAGCGCTTCATGTGC 1783338 Query 46923 ACCGTGCCCGAACTG---GAGGCGCAGTACTTTTACAATCAACAAGTGCTCATCGAATGC 46979 |||| | ||| ||||||| | ||| ||| || | | || || | Sbjct 1783339 GAGGTGC---AGCTGCCAGAGGCGCGCTGCTTCTACGGCTTCCAGATTATGATTGAGAAC 1783395 Query 46980 ATCCACACGGAAATGTACAACCTTCTCATACACGCCCTCATCAAAGACG---AAGAGAAG 47036 |||||| | || |||||| || ||||| || | |||||| ||| | |||||| Sbjct 1783396 ATCCACTCTGAGATGTACTCGCTGCTCATCGACACGTACATCAACGACCCGCAGGAGAAG 1783455 Query 47037 CAAGCGACGCTTTTGAACGGTTTCGAGAGCATGCCCTGCGT---GCGCAGAAAGGCCGAG 47093 || | ||| || |||| | |||| ||||| ||| ||||| |||||||| Sbjct 1783456 CAC---ATGCTCTTCAACGCCGTTGAGACGCTGCCCGCCGTCAAGCGCA---AGGCCGAG 1783509 Query 47094 TGGGCCATGAAGTACATTGAAAACGAAAACGTCACTC--TGGCCGAACGTTTGATCGCTT 47151 ||||||||| | || || || || || ||| | || || || | |||| | Sbjct 1783510 TGGGCCATGCGCTGGATCGACCAC--AAGCGGGCCTCCTTTGCGGAGCGCGTCGTCGCCT 1783567 Query 47152 TCGCCATCGTCGAGGGCGTCTTCTTCT-CGGGCAGCTTTGCGGCGATATTTTACATGAAA 47210 | ||| ||||||||| |||||||| |||| | || || || || || | | || Sbjct 1783568 TTGCCGCTGTCGAGGGCATCTTCTTCAGCGGGTCG-TTCGCCGCCATCTTCTGGCTCAAG 1783626 Query 47211 ACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGC 47270 | || | ||||||||||| ||| ||||||||| ||| | ||||| ||| Sbjct 1783627 AAGCGCGGCCTCATGCCCGGCCTGACGCAGTCCAACGAGCTCATCAGCCGCGACGAGGGC 1783686 Query 47271 CTGCACACCAACTTTGCCTGTCTC---TACTACAA----CACTAGA-GTCGATCAAAAGT 47322 |||||| | |||||||||| ||| | || || ||| ||| | || ||| Sbjct 1783687 CTGCACTGCGACTTTGCCTGCCTCATGTTCTCCATGCTGCACAAGAAGCCGCCCAA---- 1783742 Query 47323 TGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTT 47382 ||| || | |||| | ||| | || ||||||| |||||| |||||||| Sbjct 1783743 -GGA---GCGC---GTCATTGGCATCATCATGGACGCCGTCGAGATTGAGCAGGAGTTTT 1783795 Query 47383 TCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACA 47442 | ||||||| ||||||| || | | || |||||| | | ||| | |||||| Sbjct 1783796 TGACCGAGGCGCTGCCCGTCTCCCTCCTCGGCATGAACTCCACTCTCATGCGCGAGTACA 1783855 Query 47443 TCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAG-TATCCCAAGATTTACCACACC 47501 | || |||||| |||||||||| ||||| |||| | || |||| | ||| || || Sbjct 1783856 TTGAGTTTGTCTCCGACCGCCTCCTCGT-CAGCCTCGGCTACGACAAGGTCTACAACGCC 1783914 Query 47502 GAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAG 47561 || || ||| |||||| | |||||||| ||||||||||||||||||| || ||| Sbjct 1783915 ACCAACCCCTTCCCCTTTATGGAGAACATTTCCATCGAGGGCAAGACCAACTTCTTTGAG 1783974 Query 47562 AAGCGCGTCGGCGAATA 47578 ||||| |||| || Sbjct 1783975 CGCCGCGTGAGCGAGTA 1783991 >seq4 Length=2372320 Score = 111 bits (122), Expect = 1e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 146038 TCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGC 146097 || || ||| |||||| | | || ||| |||||||| |||||||| | ||| ||||| Sbjct 2279862 TCAACAAGGTCCTTGAGCAAGTGCTTGTTCACCACCTGGAACTCGCCAGAGAGCACGCGG 2279803 Query 146098 CTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCC 146157 | | || | |||||| ||| | ||||| | |||||||||||| ||||| ||||| || Sbjct 2279802 CGCGAGTAGATGTTGCTCGTGTAGGGCTCAATCGACTCGTTGTTGCCGAGAATCTGGGCA 2279743 Query 146158 GTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGT 146206 || | ||||| |||||| ||| ||||||| ||||| | | ||||| Sbjct 2279742 GTGGACGCGGTGGGCATGGGCGCAACCAGCAGCGAGTTGCGAATGCCGT 2279694 >seq10 Length=1852485 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||| | || | ||| ||| || || || ||||| |||| | Sbjct 1590333 CCACCGCGCAGGCGCAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 1590392 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || ||||| |||| | |||||||| || || || Sbjct 1590393 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGGG 1590452 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||||| | || | | ||| | ||| || Sbjct 1590453 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAACC 1590512 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || ||||| ||||| || || ||||| ||||||||| Sbjct 1590513 TCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATG 1590560 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||| | || | ||| ||| || || || ||||| |||| | Sbjct 1590561 CCACCGCGCAGGCGAAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 1590620 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || ||||| |||| | |||||||| || || || Sbjct 1590621 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGGG 1590680 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||||| | || | | ||| | ||| || Sbjct 1590681 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAACC 1590740 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || ||||| ||||| || || ||||| ||||||||| Sbjct 1590741 TCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATG 1590788 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||| | || | ||| ||| || || || ||||| |||| | Sbjct 1590789 CCACCGCGCAGGCGAAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 1590848 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || |||| | |||||||| || || || Sbjct 1590849 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATAAGCCGCTGCTGGTCAGGCGGG 1590908 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||||| | || | | ||| | ||| || Sbjct 1590909 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAACC 1590968 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || | || | || ||||| ||||| || || ||||| |||||||||| Sbjct 1590969 TCAAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATGG 1591017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499884660960