Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4 107 2e-18 >seq4 Length=2372320 Score = 107 bits (118), Expect = 2e-18 Identities = 423/658 (64%), Gaps = 13/658 (2%) Strand=Plus/Plus Query 123003 TTTTTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCT 123062 ||||||||||||||| || || ||||| | | |||||| | || ||| || Sbjct 2278104 TTTTTCACGCACGCGTCGCCAACGCTGTTCAACTCTGGCACGCCCATCCCGCAGCTGAGC 2278163 Query 123063 TCGTGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGC 123122 || || | |||||| || || ||||||||| || ||||| || || | | Sbjct 2278164 AGCTGCTTCCTCCTCACCATGAAGGACGACAGCATCGAGGGCATCTACGATACGCT-CAA 2278222 Query 123123 GAT-TGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAG 123181 || || || |||| ||||| | ||||||||| ||| | | ||||||| || | | Sbjct 2278223 GACGTGTGCCATGATCTCCAAGACAGCCGGCGGCATTGGCCTTAGCGTGCACAACATCCG 2278282 Query 123182 AGGCCGCGGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCT 123241 | | |||| ||| ||||| |||| | | |||||||| ||||||| Sbjct 2278283 CGCCAGCGGCTCGTACATTGCCGGCACCAACGGCCACTCGAACGGGCTCGTGCCCATGCT 2278342 Query 123242 GCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGC 123298 ||| || | ||| ||| | | ||| |||||||||||||||| ||| || ||||| Sbjct 2278343 GCGCGTGTTCAACAACACGGCGCGCTACGTCGACCAGGGCGGCAACAAGCGGCCCGGCGC 2278402 Query 123299 GATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACG 123358 | || | || || || |||||||||| || | | || ||| | | | || Sbjct 2278403 CTTTGCCGTGTACCTCGAGCCGTGGCACGCAGACATCTTTGACTTTCTCGAGCTGAAGAA 2278462 Query 123359 CAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGA 123418 |||| || | || || || |||||||| | || | ||| | ||||| ||||| Sbjct 2278463 GAACACCGGTGTTGAGGAGCAGCGTGCCCGCGACCTCTTCTTCGCGCTGTGGGTGCCCGA 2278522 Query 123419 TTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCG-GT 123477 |||||||| ||||| | | | ||| | |||| |||||||||| |||| || || Sbjct 2278523 CCTGTTTATGAAGCGCGTTGAGGCCAACGAAGAGTGGACGCTCATGTG-CCCGCACGAGT 2278581 Query 123478 GTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGC 123537 | ||||| | ||| |||||| | ||||||| |||||| | | |||||| Sbjct 2278582 GCCCCGGTCTCTCGGACACATACGGCGACGAGTTTGAGCGCCTGTACGAGAAGTACGAGG 2278641 Query 123538 GCGAAGGCAAACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTT---ATTATCG 123594 ||| ||||| | |||| ||||| | | || ||| ||| ||| Sbjct 2278642 CCGAGGGCAAGGGCCGCAAGAAGGTGTCGGCATCCAA---GCTCTGGTTTGCCATTCTCG 2278698 Query 123595 AAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAA 123652 | | || || || || || || |||||||||||||| ||||| ||||||| ||| Sbjct 2278699 ACGCCCAGACGGAGACGGGCACCCCATACATGCTCTACAAGGACGCGTGCAACAAGAA 2278756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002329893840