Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4 172 7e-38 seq10 129 7e-25 >seq4 Length=2372320 Score = 172 bits (190), Expect = 7e-38 Identities = 400/596 (67%), Gaps = 8/596 (1%) Strand=Plus/Minus Query 115805 GATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTAT 115864 ||||||| | || | ||||| ||||| |||| || |||| | | |||||| | Sbjct 2279894 GATCCTTGACCTCATCGGACCACAGACCCATCTCAACAAGGTCCTTGAGCAAGTGCTTGT 2279835 Query 115865 TGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCT 115924 | || || ||||| || | ||| ||| | | ||||||||| ||||||| |||| Sbjct 2279834 TCACCACCTGGAACTCGCCAGAGAGCACGCGGCGCGAGTAGATGTTGCTCGTGTAGGGCT 2279775 Query 115925 CAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGA 115984 ||| |||| ||||| || | || ||||| ||||| || ||||||||||| || | | Sbjct 2279774 CAATCGACTCGTTGTTGCCGAGAATCTGGGCAGTGGACGCGGTGGGCATGGGCGCAACCA 2279715 Query 115985 GAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGT 116044 | || |||||| | || || | | | ||| || || | ||||| || | Sbjct 2279714 GCAGCGAGTTGCGAATGCCGTCCTTCTTCACGCGCTCGCGAAGCGACTCCCAATCCCACA 2279655 Query 116045 TGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATC 116104 | | | | || | | |||||||| |||||||| || || || | || | ||||| | Sbjct 2279654 GGTCCGTGGGCTTCACATCCCACATGTCAAACTGAAGAATGCCCTCAGAGGTGGGCGAGC 2279595 Query 116105 CCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTG 116164 ||||||| ||||| ||||| |||||||| ||| | || | | || |||||||| Sbjct 2279594 CCTCAAAAGTCTCGTATGGCCCCTCAACGGACGCAATCTCCGTGGAGGCTTCGAGGGCGC 2279535 Query 116165 CGTGATACATTGTCTCAAAAATGCGAGC-ATTCA--TTGCCTTGGCCTCGTCGGAATCAA 116221 |||| || || ||||| ||||| | || |||| | || | ||||||||| |||| Sbjct 2279534 CGTGGTAGATGGTCTCGAAAAT-CTTGCGGTTCACCTCGCGT--GCCTCGTCGCTGTCAA 2279478 Query 116222 ACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGC 116281 | | ||||| || ||||| | || || || || || || || | |||||| |||| Sbjct 2279477 AGGGAAGACGCATCAGGATAAACGCGTCGGCAAGGCCCTGCACGCCAATGCCAATGGGGC 2279418 Query 116282 GATGTCTCATATTAGACTTTCGAGCGGTCT-CCACGGGATAAAAATTCCTATCGATAACC 116340 | || | ||| || ||||| || || ||| || || || | || | ||||||| | Sbjct 2279417 GGTGGCGCATGTTGGACTTGCGCGC-CTCTGGGACAGGGTAGTAGTTGATGTCGATAATC 2279359 Query 116341 CTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA 116396 | || || || |||| ||||| || | || || ||||| | ||||||||| Sbjct 2279358 TTGTTGAGGTTGCGCGTGAGCACCTTGGTAACCTCGTGCAGCTTCTTGTAATCAAA 2279303 Score = 156 bits (172), Expect = 5e-33 Identities = 446/680 (66%), Gaps = 13/680 (2%) Strand=Plus/Minus Query 116543 TGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA 116602 |||| ||||| |||||||||||||| ||||| || ||||||||||| |||| | ||||| Sbjct 2278752 TGTTGCACGCGTCCTTGTAGAGCATGTATGGGGTGCCCGTCTCCGTCTGGGCGTCGAGAA 2278693 Query 116603 TAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACT 116662 | || ||| | | || || | ||| | | | | ||||| ||||||||| Sbjct 2278692 TGGCAAACCAGAGCTTGGATGCCGACACCTTCTTGCGGCCCTTGCCCTCGGCCTCGTACT 2278633 Query 116663 TTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTG 116722 | ||| ||| ||||||||| || || | || ||||| || || || | | Sbjct 2278632 TCTCGTACAGGCGCTCAAACTCGTCGCCGTATGTGTCCGAGAGACCGGGGCACTCGTGCG 2278573 Query 116723 GACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 116782 | || | ||| | ||| | | ||||||| |||||||| || ||||| || | || Sbjct 2278572 GGCACATGAGCGTCCACTCTTCGTTGGCCTCAACGCGCTTCATAAACAGGTCGGGCACCC 2278513 Query 116783 AGAGCGCCGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAA 116840 | ||||| ||||||| || || || ||| || ||| | || || || Sbjct 2278512 ACAGCGCGAAGAAGAGGTCGCG--GGCACGCTGCTCCTCAACACCGGTGTTCTTCTTCAG 2278455 Query 116841 CTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTT 116900 ||| | |||||| | ||| || ||||||||||| || |||||||| || | | | || Sbjct 2278454 CTCGAGAAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTACACGGC-AAAGGCGCCGG 2278396 Query 116901 GCGAC----GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTG 116956 || | || |||||| || || | |||||| ||| || ||||| ||||| | Sbjct 2278395 GCCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATGG 2278336 Query 116957 GAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGAC 117014 | | || || | || ||||| || || || || |||||| | | |||| | || Sbjct 2278335 GCACGAGCCCGTTCGAGTGGCCGTTGGTGCCGGCAATGTACGAGCC--GCTGGCGCGGAT 2278278 Query 117015 ATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAG 117074 | ||| | | | ||||| || || || ||| ||||| || ||| | |||| Sbjct 2278277 GTTGTGCACGCTAAGGCCAATGCCGCCGGCTGTCTTGGAGATCATGGCACACGTCTTGAG 2278218 Query 117075 ACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACAT 117134 | ||||||| || ||||| ||| |||| | | || |||||||||||| || Sbjct 2278217 CGTATCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGGAGGAAGCAGCTGCTCAG 2278158 Query 117135 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG 117194 || || | || || |||| |||||| || ||||| | |||||| |||| | || | Sbjct 2278157 CTGCGGGATGGGCGTGCCAGAGTTGAACAGCGTTGGCGACGCGTGCGTGAAAAAGCCCTC 2278098 Query 117195 GGACATCTTATCGTAGGTCT 117214 |||||| | | ||| |||| Sbjct 2278097 GGACATGTAGTTGTACGTCT 2278078 >seq10 Length=1852485 Score = 129 bits (142), Expect = 7e-25 Identities = 280/419 (67%), Gaps = 0/419 (0%) Strand=Plus/Minus Query 175748 CCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 175807 || ||||| || || ||| |||||||||| || ||||| || || | ||| || || Sbjct 1769506 CCCGTGCCGATGCCGTCGCTGCCGTTCACCAGCACCATGGGCAGGATGGGCGCGTAAAAC 1769447 Query 175808 TCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCGGA 175867 ||||| ||||||| |||| || || |||| | |||||||| || ||| ||| | Sbjct 1769446 TCTGGCTCAATCGTCTGCCCGTCGTCCTCCAGGTGGTTGAGCAGGGCGTCGTCCGCCAAG 1769387 Query 175868 TCAAAGATTTTACGAGCATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGACGCA 175927 | ||||| || || || | | ||| ||||||||||| | || | ||| Sbjct 1769386 TGGAAGATCTTGCGCGCCAGCGGCGACAGTGAGGTGAAGATGTAACGCGAGCTGGCCGCG 1769327 Query 175928 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTG 175987 || ||||| ||| || ||||| ||||| || ||| ||| || || |||| ||| Sbjct 1769326 TCCTTGCCGCCCGCCAGGCGCGTGCCAAACTGGCCAATGGGCAGCAGCAGGTTGAGGTTG 1769267 Query 175988 TTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCG 176047 || ||||| | | ||||| ||||| || | || ||| | || ||| Sbjct 1769266 TTGCTGCCCACGAACCGCTGCGCCATGCCCACAATGGTGCCGGCCAGGCTCATCTCGCCG 1769207 Query 176048 TGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCATCC 176107 || ||||||||||| | |||| || ||| | || | |||||||||||| ||||| ||| Sbjct 1769206 TGGTGGTAGGCCGAGTGCTCCGAGACGTACCCGGCAAGCTGCGCCACCTTGATCTCGTCC 1769147 Query 176108 TTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 176166 ||||| || | |||||| | | | ||||| | ||| |||||||| ||||| Sbjct 1769146 TTGAGCTTGCGCTTGAAGCAGGAGAAGAGCACCTTGCGCTGGCCCGGCTTGAGCCCGTC 1769088 Score = 123 bits (136), Expect = 3e-23 Identities = 282/416 (68%), Gaps = 15/416 (4%) Strand=Plus/Minus Query 176584 CACAAACCC-CAACTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGAC 176642 |||| || | || |||||| | ||| |||||||||| |||||| | |||| || ||| | Sbjct 1768136 CACACACACACACCTTGAGCAAGGAGGGCCAGAAGTGGTGGATGAAGTTGATGAGGAGGC 1768077 Query 176643 CCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAA 176702 |||| ||||| || || || | |||| ||| ||||| ||||||||||| || || || | Sbjct 1768076 CCTTGATGTGGGAGCCGTCCTGATCCTGATCGGTCATGATCATGAGCCGCCCGTATCGGA 1768017 Query 176703 GCT-CGGAAACATCTTGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCA 176761 ||| | | || || || || | || | || |||| ||||| | | Sbjct 1768016 GCTGCTTCGTCGTCGTG-TACTCGTGCCCAAACTTGAGGCCCATGATCTTGGCAATGTTC 1767958 Query 176762 TTGAACTCTTGGTT-----TGATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTAC 176816 || | ||| ||| | || || ||| || || || ||||| || || Sbjct 1767957 TTCACCTCCGCGTTGTCCATAATCTG-CTTGTGC----GACGCCTCGCGCACGTTAAGCA 1767903 Query 176817 ACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAA 176876 ||| |||||||| ||||| || ||||||| || || |||| ||| || || | Sbjct 1767902 GCTTGCCGCGGAGCGGGAAGACGCCGTAGTAGTCGCGCCCAAGCACGCCCAGCCCGCTCA 1767843 Query 176877 CTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGA-TTGT 176935 | || || | ||| ||||| |||||||| |||| ||||||||| |||||| || ||| Sbjct 1767842 CCGCCAGCGCCTTGGCGGAGTCACCCTCGGTCAGGATGAGCGTGCACTTTGACGAGTTGC 1767783 Query 176936 GCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTT 176991 ||| || |||| ||| || ||||||| |||||| || || | || ||| |||| Sbjct 1767782 GCC-CGCCGGCCTCGTTGGCGTCGTCCAGCTTGGGGATGCCGGAGATCTTGCACTT 1767728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506018998640