Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq8 172 9e-38 seq4 154 2e-32 >seq8 Length=1951132 Score = 172 bits (190), Expect = 9e-38 Identities = 431/649 (66%), Gaps = 23/649 (4%) Strand=Plus/Minus Query 159652 CTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCTT 159711 ||| || ||||||||||||||||| ||||| || ||||| || ||| ||||| | Sbjct 1783974 CTCAAAGAAGTTGGTCTTGCCCTCGATGGAAATGTTCTCCATAAAGGGGAAGGGGTTGGT 1783915 Query 159712 CACGTGATAGCGCTTCGGAAATCCGAGAGCCGCC-AGCAACCTGTCTGCCACAAATTCGA 159770 ||| ||| ||| | ||||| || | | || | | ||| | ||||| || | Sbjct 1783914 GGCGTTGTAGACCTTGTCGTAGCCGAG-GCTGACGAGGAGGCGGTCGGAGACAAACTCAA 1783856 Query 159771 TGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACA 159830 |||| | ||| | |||| || || || || ||||| ||||| || | || Sbjct 1783855 TGTACTCGCGCATGAGAGTGGAGTTCATGCCGAGGAGGGAGACGGGCAGCGCCTCGGTCA 1783796 Query 159831 GAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA--GACACGTTCGTACCC 159888 |||||||| |||||||||||| || || | | || || | ||| || || | Sbjct 1783795 AAAACTCCTGCTCAATCTCGACGGCGTCCATGATGAT--GCCAATGACGCGCTCCTTGGG 1783738 Query 159889 CGGCTT---GCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 |||||| | || ||| | |||| |||||| ||||||||||||||||| || Sbjct 1783737 CGGCTTCTTGTGCAGCATGGAG------AACATGAGGCAGGCAAAGTCGCAGTGCAGGCC 1783684 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 |||||| || ||||| |||||||||| | ||||| ||||||| || ||| || Sbjct 1783683 CTCGTCGCGGCTGATGAGCTCGTTGGACTGCGTCAGGCCGGGCATGAGGCCGCGCTTCTT 1783624 Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGC 160065 |||||| || ||||| || || | ||||| || ||||| ||||| || || ||||| || Sbjct 1783623 GAGCCAGAAGATGGCGGCGAACGACCCGCTGAAGAAGATGCCCTCGACAGCGGCAAAGGC 1783564 Query 160066 CACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 |||| | ||| |||| ||||| ||| | | |||| | ||||||| || || Sbjct 1783563 GACGACGCGCTCCGCAAAGGAGGCCCGCTTGTGGTCGATCCAGCGCATGGCCCACTCGGC 1783504 Query 160126 CTTCTTTGCGATGCACGGCATGC----GCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181 | ||||| | ||||| || ||| |||||||| || | ||| || ||||| Sbjct 1783503 C----TTGCGCTTGACGGCGGGCAGCGTCTCAACGGCGTTGAAGAGCATGTGCTTCTCCT 1783448 Query 160182 TCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 | || ||||| || | || ||| ||||||||| || | ||| | || || | Sbjct 1783447 GCGGGTCGTTGATGTACGTGTCGATGAGCAGCGAGTACATCTCAGAGTGGATGTTCTCAA 1783388 Query 160242 TGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTC 160290 | ||||| ||| |||||| | |||||| | ||||||||| Sbjct 1783387 TCATAATCTGGAAGCCGTAGAAGCAGCGCGCCTCTGGCAGCTGCACCTC 1783339 >seq4 Length=2372320 Score = 154 bits (170), Expect = 2e-32 Identities = 179/236 (76%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 203832 CCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAG 203890 ||||| || ||| ||||| ||||| |||||||| ||| ||| || | ||| ||| Sbjct 2280452 CCTTCTTCGCGTCGACCGTAAACTGGATGGCGTTGGTGGC-GGCACGCGAGCGCAGGTAG 2280394 Query 203891 TACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTC 203950 |||||||| ||||| |||||| || |||| |||| | ||||||||| | || |||| Sbjct 2280393 TACATGCCCGTCTTAAGGCCCCGCTTCCACGCGTAAAAGTGCATGGACGTGAGCTTGCCA 2280334 Query 203951 ACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CG 204009 | ||||||||||| ||||| | ||| | |||||||| |||||||| ||||||||| || Sbjct 2280333 AAGTTGGGGTCGGAGATGTGCACGTTGAACGACTGGCTCTGGTCGAT-AAAGGCGCCGCG 2280275 Query 204010 ATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 ||| || ||||| | || | || ||| || | |||||||||||||||| ||| Sbjct 2280274 ATCAGCAGCCATGTCAATCAGCGTACGCTGGGAGAGCTCCCACACCGTCTTGTACA 2280219 Score = 111 bits (122), Expect = 3e-19 Identities = 241/355 (68%), Gaps = 12/355 (3%) Strand=Plus/Minus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || ||||||||||||| | |||||| || | || || || ||||| | | || Sbjct 2278535 CTTCATAAACAGGTCGGGCACCCACAGCGCGAAGAAGAGGTCGCGGGCACGCTGCTCCTC 2278476 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283 | || |||||| |||| || || ||| | | ||||| |||||||||||||| | Sbjct 2278475 AACACCGGTGTTCTTCTTCAGCTCGAGA-AAGTCAAAGATGTCTGCGTGCCACGGCTCGA 2278417 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 ||||||| | ||||| |||| |||||| || |||||||| || ||| | | | Sbjct 2278416 GGTACACGGCAAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCCGTGT 2278357 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 |||||| || |||||||| ||||| || ||||| | | ||||| |||| | ||| Sbjct 2278356 TGTTGAACACGCGCAGCATGGGCACGAGCCCGTTCGAGTGGCCGTTGGTGCCGGCAATGT 2278297 Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGC----GCCAATCCCGCCAGAACACTTG 205459 |||||| || | | |||| || ||| |||||| ||||| | |||| Sbjct 2278296 ACGAGCCGCTGGCGCGGATGTTG----TGCACGCTAAGGCCAATGCCGCCGGCTGTCTTG 2278241 Query 205460 GCGATCTGGGCGCAC-TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCC 205513 | |||| ||| ||| ||||| || || ||||||||| ||||| |||||| Sbjct 2278240 GAGATCATGGCACACGTCTTG-AGCGTATCGTAGATGCCCTCGATGCTGTCGTCC 2278187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795153669326240