Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq8 390 1e-103 seq10 125 7e-24 seq2 82.4 8e-11 >seq8 Length=1951132 Score = 390 bits (432), Expect = 1e-103 Identities = 637/898 (71%), Gaps = 26/898 (3%) Strand=Plus/Minus Query 132627 CTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGC 132686 |||||| || || || || ||||| | ||||||| | |||||| |||||||||| Sbjct 1783974 CTCAAAGAAGTTGGTCTTGCCCTCGATGGAAATGTTCTCCATAAAGGGGAAGGGGTTGGT 1783915 Query 132687 TGTGTTGTAGTGCTTG--GT-GCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTC 132743 | ||||||| |||| || ||||| || |||||| || | ||||| || ||||| Sbjct 1783914 GGCGTTGTAGACCTTGTCGTAGCCGA---GGCTGACGAGGAGGCGGTCGGAGACAAACTC 1783858 Query 132744 GATGTATT-GCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGG 132802 ||||| | ||| |||| | | || | || || || || |||||||| |||| Sbjct 1783857 AATGTACTCGCG-CATGAGAGTGGAGTTCATGCCGAGGAGGGAGACGGGCAGCGCCTCGG 1783799 Query 132803 TGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGC 132862 | | ||| ||||| || |||| ||||| ||| ||| | | |||||| || | Sbjct 1783798 TCAAAAACTCCTGCTCAATCTCGACGGCGTCCATGATGATGCCAATGACGCGCTCCTTGG 1783739 Query 132863 TCGGC--CGT-TGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 |||| | | |||| || || |||||| | ||| ||||||||||| |||| ||||| Sbjct 1783738 GCGGCTTCTTGTGCAGCA--TGGA-GAACATGAGGCAGGCAAAGTCGCAGTGCAGGCCCT 1783682 Query 132920 CGTCCCTGGAAATGAGTTCGTTG--CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTT 132977 |||| | | ||||| |||||| ||| |||| |||||||||||||||||| || || Sbjct 1783681 CGTCGCGGCTGATGAGCTCGTTGGACTGC--GTCAGGCCGGGCATGAGGCCGCGCTTCTT 1783624 Query 132978 GAGCCAAAATATGGCGGCGAAACTGCCCGAA-AAGAAGACGCCCTCGACGGCCGCGAAAG 133036 |||||| || ||||||||||| | |||| ||||||| ||||||||| || || || | Sbjct 1783623 GAGCCAGAAGATGGCGGCGAA-CGACCCGCTGAAGAAGATGCCCTCGACAGCGGCAAAGG 1783565 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | || | |||||| | || | ||| ||| | |||||||||||| ||||| |||| Sbjct 1783564 CGACGACGCGCTCCGCAAAGGAGGCCCGCTTGTGGTCGATCCAGCGCATGGCCCACTCGG 1783505 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCG 133156 |||| |||||| |||| ||| || | |||||| || | | | ||||| | || Sbjct 1783504 CCTTGCGCTTGACGGCGGGCAGCGTCTCAACGGCGTTGAAGAGCATGTGCTTCTCCTGCG 1783445 Query 133157 AGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGG 133216 | | ||| ||||||||||| ||| ||||| || ||||| | |||||| || Sbjct 1783444 GGTCGTTGATGTACGTGTCGATGAGCAGCGAGTACATCTCAGAGTGGATGTTCTCAATCA 1783385 Query 133217 CGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCT 133276 || || |||||||| ||||| |||||||| || |||||| || ||| |||| Sbjct 1783384 TAATCTGGAAGCCGTAGAAGCAGCGCGCCTCTGGCAGCTGCACCTCGCACATGAAGCGCT 1783325 Query 133277 CGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGA 133336 |||| || || ||||| || |||||||||||||||||||| ||||| || |||||||||| Sbjct 1783324 CGACGAGGTTCTCGTTCACAATGCCGTCGCTGGCGGCGAAGAAGGCGAGGACGTGCTTGA 1783265 Query 133337 TGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCG-CGCGTGTCCTTGGACAGGTCC 133395 | || || |||| |||| || | || ||||| | || | ||| |||||||| Sbjct 1783264 TAAAGTGCTGCTCCGTGTCCTTGAGGCCGCGCCAGTGGTCGAG-GTCGCGCGACAGGTCA 1783206 Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT--ACTCCACATGTCCG 133453 |||||||| ||||||| || || || |||| || |||||||| || ||| || | | Sbjct 1783205 ACCTCCTCCGCGGTCCAGAAGGAGGCGACGGCCTTCTTGTACATGGACCACACCTGGCGG 1783146 Query 133454 AATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCCGC 133511 | || ||||| | || ||||| |||| ||||| || |||| ||| ||||| || Sbjct 1783145 --TGCTGAATGGGCAGGATGACAAAGCGGCTCGGGTTCTCCCGCAGCAGGGGCTCGGC 1783090 >seq10 Length=1852485 Score = 125 bits (138), Expect = 7e-24 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| || ||||| |||||||| | || || ||| | | Sbjct 1590559 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACACTTGAGGTTGAGCCATCT 1590500 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | || |||| | || | || |||| ||||| ||||| || |||||| |||| Sbjct 1590499 GACTCGATTGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGACC 1590442 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||||||||| | || ||||| ||||| || |||| ||||| || | |||||||| Sbjct 1590441 AGCAGCGGCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACA 1590382 Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| ||| ||||| || | |||||||| || | || ||| Sbjct 1590381 ACATCCAGAAGGAGAGC-ACGCTTCACCTTGTGCTGCGCCTGCGCGGTGGC 1590332 Score = 120 bits (132), Expect = 3e-22 Identities = 170/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| || ||||| |||||||| | || || ||| | | Sbjct 1590787 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACACTTGAGGTTGAGCCATCT 1590728 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | || |||| | || | || |||| ||||| ||||| || |||||| |||| Sbjct 1590727 GACTCGATTGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGACC 1590670 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||||||||| | || ||||| ||||| || |||| ||||| || | |||||||| Sbjct 1590669 AGCAGCGGCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACA 1590610 Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| ||| ||||| || | ||||| || || | || ||| Sbjct 1590609 ACATCCAGAAGGAGAGC-ACGCTTCACCTTGTGCTTCGCCTGCGCGGTGGC 1590560 Score = 116 bits (128), Expect = 4e-21 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| || ||||| |||||||| | || || ||| | | Sbjct 1591015 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACGCTTGAGGTTGAGCCATCT 1590956 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | || |||| | || | || |||| ||||| ||||| || |||||| |||| Sbjct 1590955 GACTCGATTGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGACC 1590898 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | |||||||| || | || ||||| ||||| || |||| ||||| || | |||||||| Sbjct 1590897 AGCAGCGGCTTATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACA 1590838 Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| ||| ||||| || | ||||| || || | || ||| Sbjct 1590837 ACATCCAGAAGGAGAGC-ACGCTTCACCTTGTGCTTCGCCTGCGCGGTGGC 1590788 >seq2 Length=2479747 Score = 82.4 bits (90), Expect = 8e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | || || ||||| ||||| | ||| ||||| |||||||| |||| ||| Sbjct 86799 GGTATCCCCCCGGATCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 86858 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 || || | |||||||||||| || ||||| ||| || || || | |||||||| Sbjct 86859 ACGCTGAGCGACTACAACATTCAGAAGGAGAGC-ACCCTCCACCTTGTGCTGCG 86911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171837167360