Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4 129 7e-25 seq8 96.9 4e-15 >seq4 Length=2372320 Score = 129 bits (142), Expect = 7e-25 Identities = 445/691 (64%), Gaps = 25/691 (4%) Strand=Plus/Plus Query 111676 AGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACG 111735 |||| ||| || | |||||| || | |||| ||||| | ||||| || |||||| Sbjct 2278078 AGACGTACAACTACATGTCCGAGGGCTTTTTCACGCACGCGTCGCCAACGCTGTTCAACT 2278137 Query 111736 CTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAA 111795 |||| || || | || || || ||| || ||||| | | | ||||| || | Sbjct 2278138 CTGGCACGCCCATCCCGCAGCTGAGCAGCTGCTTCCTCCTCACCATGAAGGACGACAGCA 2278197 Query 111796 TCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTA 111855 || | ||||| |||| || |||| |||||| ||||| ||| || || || | Sbjct 2278198 TCGAGGGCATCTACGATACGCTCAAGACGTGTGCCATGATCTCCAAGACAGCCGGCGGCA 2278257 Query 111856 TCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACAAATGG 111913 | || | | | || | || | |||| | | |||||| || || || || || Sbjct 2278258 TTGGCCTTAGCGTGCACAACATCCGCGCCAGC--GGCTCGTACATTGCCGGCACCAACGG 2278315 Query 111914 TCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAA 111973 || || | || | | || ||||| ||||| || ||| ||| |||||||| || | Sbjct 2278316 CCACTCGAACGGGCTCGTGCCCATGCTGCGCGTGTTCAACAACACGGCGCGCTACGTCGA 2278375 Query 111974 CCAAGCTGGGCGTCG-CAAG------GGATCTATCGCAGTCTATCTTGAGCCATGGCACG 112026 ||| ||||| | |||| || | | || || || || ||||| ||||||| Sbjct 2278376 CCA----GGGCGGCAACAAGCGGCCCGGCGCCTTTGCCGTGTACCTCGAGCCGTGGCACG 2278431 Query 112027 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCC 112086 | || ||| | || || || ||| || ||| |||| ||||||| ||| || Sbjct 2278432 CAGACATCTTTGACTTTCTCGAGCTGAAGAAGAACACCGGTGTTGAGGAGCAGCGTGCCC 2278491 Query 112087 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 112146 |||| ||||||| ||| || ||| | || || || || |||||| | ||||||| | | Sbjct 2278492 GCGACCTCTTCTTCGCGCTGTGGGTGCCCGACCTGTTTATGAAGCGCGTTGAGGCCAACG 2278551 Query 112147 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGG 112206 | ||| | ||| | || || || || ||||||||||| || | || || | Sbjct 2278552 AAGAGTGGACGCTCATGTGCCCGCACGAGTGCCCCGGTCTCTCGGACACATACGGCGACG 2278611 Query 112207 AGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC-----GACGGT 112261 ||||||| ||| ||| |||||||||| || |||| | || || ||| Sbjct 2278612 AGTTTGAGCGCCTGTACGAGAAGTACGAGGCCGA-----GGGCAAGGGCCGCAAGAAGGT 2278666 Query 112262 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321 | | || || | | ||| || |||||| | | || || ||||| || || ||||| Sbjct 2278667 GTCGGCATCCAAGCTCTGGTTTGCCATTCTCGACGCCCAGACGGAGACGGGCACCCCATA 2278726 Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAG 112352 ||||| ||||| ||||| || ||| | ||| Sbjct 2278727 CATGCTCTACAAGGACGCGTGCAACAAGAAG 2278757 >seq8 Length=1951132 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 |||||||| ||||| || |||| ||||| ||| ||||| ||||||||| || || Sbjct 1783543 TCCTTTGCGGAGCGCGTCGTCGCCTTTGCCGCTGTCGAGGGCATCTTCTTCAGCGGGTCG 1783602 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 ||| ||| || | |||||||||||||| || |||||||| || || |||||| Sbjct 1783603 TTCGCCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGACGCAGTCCAAC 1783662 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| ||| || |||||||| || ||| || ||||| Sbjct 1783663 GAGCTCATCAGCCGCGACGAGGGCCTGCACTGCGACTTTGC 1783703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741205070880