Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4 150 2e-31 >seq4 Length=2372320 Score = 150 bits (166), Expect = 2e-31 Identities = 399/606 (66%), Gaps = 10/606 (2%) Strand=Plus/Minus Query 109655 GATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAA-CAAGATGCTTG 109713 ||||||| | ||| | ||||| ||||| | || || || | | |||| |||||| Sbjct 2279894 GATCCTTGACCTCATCGGACCACAGACCCATCTCAACAAGGTCCTTGAGCAAG-TGCTTG 2279836 Query 109714 TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGT 109773 || ||||| || || |||| || ||| || ||||||||| |||||||||| Sbjct 2279835 TTCACCACCTGGAACTCGCCAGAGAGCACGCGGCGCGAGTAGATGTTGCTCGTGTAGGGC 2279776 Query 109774 TCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATG 109833 || | |||| |||||||| || || || |||||||| || ||||||||||| || | Sbjct 2279775 TCAATCGACTCGTTGTTGCCGAGAATCTGGGCAGTGGACGCGGTGGGCATGGGCGCAACC 2279716 Query 109834 AGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATA- 109892 || || ||| || | || | | |||| || ||||| || | | |||||||| | Sbjct 2279715 AGCAGCGAGTTGCGAATGCCGTCCTTCTTCACGCGCTCGCGAAGCGACTCCCAATCCCAC 2279656 Query 109893 ACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGC 109952 | | || | | || |||||||||| || ||||| | ||||||| | Sbjct 2279655 AGGTCC-------GTGGGCTTCACATCCCACATGTCAAACTGAAGAATGCCCTCAGAGGT 2279603 Query 109953 AGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTC 110012 || || |||| ||| ||||||| | ||||||||| || | ||| | || || || Sbjct 2279602 GGGCGAGCCCTCAAAAGTCTCGTATGGCCCCTCAACGGACGCAATCTCCGTGGAGGCTTC 2279543 Query 110013 TAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACA 110072 || || | || || || ||||| ||||| | |||| ||| | ||| || | Sbjct 2279542 GAGGGCGCCGTGGTAGATGGTCTCGAAAATCTTGCGGTTCACCTCGCGTGCCTCGTCGCT 2279483 Query 110073 GTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAAT 110132 ||| |||||||||| || |||||| | || || || ||||| || || | ||||| Sbjct 2279482 GTCAAAGGGAAGACGCATCAGGATAAACGCGTCGGCAAGGCCCTGCACGCCAATGCCAAT 2279423 Query 110133 GGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGAT 110192 |||||| || |||||| || || || | || ||||| ||||| |||||| Sbjct 2279422 GGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCTGGGACAGGGTAGTAGTTGATGTCGAT 2279363 Query 110193 GACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAA 110252 | | ||||| || ||| | ||| || | || || || || | |||||| || Sbjct 2279362 AATCTTGTTGAGGTTGCGCGTGAGCACCTTGGTAACCTCGTGCAGCTTCTTGTAATCAAA 2279303 Query 110253 CGTTTT 110258 ||| || Sbjct 2279302 CGTCTT 2279297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974866221200