Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4 140 4e-28 >seq4 Length=2372320 Score = 140 bits (154), Expect = 4e-28 Identities = 449/688 (65%), Gaps = 19/688 (3%) Strand=Plus/Minus Query 106570 CTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTT 106629 ||| ||||||||||| ||||||||||||||||| || || |||||||||||||| | | Sbjct 2278757 CTTCTTGTTGCACGCGTCCTTGTAGAGCATGTATGGGGTGCCCGTCTCCGTCTGGGCGTC 2278698 Query 106630 GAGAATTGCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCCCGT-CCCTCCGCCT 106688 |||||| || ||| | | || || | || | | ||||| | ||||| |||| Sbjct 2278697 GAGAATGGCAAACCAGAGCTTGGATGCCGACACCTTCTTG-CGGCCCTTGCCCTCGGCCT 2278639 Query 106689 CGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCT 106748 ||||||| ||| ||| |||||||| || || | ||| |||||||| || || Sbjct 2278638 CGTACTTCTCGTACAGGCGCTCAAACTCGTCGCCGTATGTGTCCGAGAGACCGGGGCACT 2278579 Query 106749 TGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTG 106808 || || || | || | ||| | | ||||||| |||||||| || ||||| | Sbjct 2278578 CGTGCGGGCACATGAGCGTCCACTCTTCGTTGGCCTCAACGCGCTTCATAAACAGGTCGG 2278519 Query 106809 GAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 106868 | | |||||| | | ||||| || | || ||| || |||| ||| || Sbjct 2278518 GCACCCACAGCGCGAAGAAGAGGTCGCGGGCACGCTGCTCCTCAACACCGGTGTT-CTTC 2278460 Query 106869 GT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGAT 106927 | | ||| || || || | ||| || |||||||| ||||| || || || || | | Sbjct 2278459 TTCAGCTCGAGAAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTACACGGCAAAGGCG 2278400 Query 106928 CC------CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCG 106980 || ||| | | ||||| || | || |||||||| ||| ||| || ||||| Sbjct 2278399 CCGGGCCGCTTGTTGCCGCCC----TGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCG 2278344 Query 106981 AAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTG 107038 ||||| || | | || | || || || || || || || |||||| || Sbjct 2278343 CAGCATGGGCACGAGCCCGTTCGAGTGGCCGTTGGTGCCGGCAATGTACGAG--CCGCTG 2278286 Query 107039 GCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 107098 || | | | || | | | ||||| || || || ||| ||||| |||||| Sbjct 2278285 GCGCGGATGTTGTGCACGCTAAGGCCAATGCCGCCGGCTGTCTTGGAGATCATGGCACAC 2278226 Query 107099 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 107158 | | || || | ||||| || | ||| ||| ||||| ||| || |||||||| Sbjct 2278225 GTCTTGAGCGTATCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGGAGGAAGCAG 2278166 Query 107159 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 107218 ||| || |||||| | || || |||| ||||| || ||||| | ||||| |||| Sbjct 2278165 CTGCTCAGCTGCGGGATGGGCGTGCCAGAGTTGAACAGCGTTGGCGACGCGTGCGTGAAA 2278106 Query 107219 ATACCTTGGGACATCTTGTCGTATGTCT 107246 | || | |||||| | || ||| |||| Sbjct 2278105 AAGCCCTCGGACATGTAGTTGTACGTCT 2278078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979664286960