Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq10 116 8e-21 >seq10 Length=1852485 Score = 116 bits (128), Expect = 8e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| ||| ||| || || || ||||| ||| || || | || || || Sbjct 1590807 ACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCA 1590866 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || |||||||| || || ||||| || || ||||| || ||||| || Sbjct 1590867 AGCTGCTTGCCGGCAAAGATAAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 1590926 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||||||||| | ||| || || || ||||| || | ||||| Sbjct 1590927 ATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAACCTCAAGCGTGATGGTCTTG 1590986 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 1590987 CCAGTCAGCGTCTTCACAAAGATCTGCAT 1591015 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| ||| ||| || || || ||||| ||| || || | || || || Sbjct 1590351 ACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCA 1590410 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || || ||||| || ||||| || Sbjct 1590411 AGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 1590470 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||||||||| | ||| || || || ||||| || | ||||| Sbjct 1590471 ATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAACCTCAAGTGTGATGGTCTTG 1590530 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 1590531 CCAGTCAGCGTCTTCACAAAGATCTGCAT 1590559 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| ||| ||| || || || ||||| ||| || || | || || || Sbjct 1590579 ACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCA 1590638 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || || ||||| || ||||| || Sbjct 1590639 AGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 1590698 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||||||||| | ||| || || || ||||| || | ||||| Sbjct 1590699 ATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAACCTCAAGTGTGATGGTCTTG 1590758 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 1590759 CCAGTCAGCGTCTTCACAAAGATCTGCAT 1590787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109479410854118