Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq8 269 5e-67 seq4 244 2e-59 seq12 109 1e-18 >seq8 Length=1951132 Score = 269 bits (298), Expect = 5e-67 Identities = 576/848 (68%), Gaps = 23/848 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || | ||| | |||||||||||| ||||| ||||| | || |||||||| Sbjct 1783995 CTGGTACTCGCTCACGCGGCGCTCAAAGAAGTTGGTCTTGCCCTCGATGGAAATGTTCTC 1783936 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCAT-CTGTTCCAGC 47956 ||| ||| |||||||||||| | ||| || ||| |||| ||| | ||| | || Sbjct 1783935 CATAAAGGGGAAGGGGTTGGTGGCGTTGTAGACCT-TGTCGTAGCCGAGGCTGA-CGAGG 1783878 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || | ||| |||| ||||| | |||||| ||| ||||||||| | |||| Sbjct 1783877 AGGCGGTCGGAGACAAACTCAATGTACTCGCGCATGAGAGTGGAGTTCATGCCGAGGAGG 1783818 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 || ||||||| |||| || | |||||||| ||| |||| ||||| ||| | || Sbjct 1783817 GAGACGGGCAGCGCCTCGGTCAAAAACTCCTGCTCAATCTCGACGGCGTCCATGATGATG 1783758 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATG---CAG 48133 | ||||| || | || || ||| |||| | ||| ||| |||| ||| Sbjct 1783757 CCAATGACGCGCTCCTTGGGCGGCTTCTTGTGCAG---CATGG---AGAACATGAGGCAG 1783704 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| | ||||| ||| ||||| |||||||||||| ||||||| || || Sbjct 1783703 GCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGACTGCGTCAGGCCG 1783644 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| || | || ||||||||||| || || ||||| || || |||||||||| Sbjct 1783643 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGGCGAACGACCCGCTGAAGAAGATG 1783584 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 ||||| || || || || ||| || | ||| | || || || ||||| |||| Sbjct 1783583 CCCTCGACAGCGGCAAAGGCGACGACGCGCTCCGCAAAGGAGGCCCGCTTGTGGTCGATC 1783524 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 ||| | ||||| || ||||| ||||| | |||| |||||| | ||| |||| Sbjct 1783523 CAGCGCATGGCCCACTCGGCCTTGCGCTTGACGGCGGGCAGCGTCTCAACGGCGTTGAAG 1783464 Query 48374 AGCTTCTTGCACTCACCTGC--GTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACA 48428 ||| | ||| || ||||| ||| | || || |||||||| | ||||| Sbjct 1783463 AGCAT-GTGC-TTCTCCTGCGGGTCGTTGATGTACGTGTCGATGAGCAGC---GAGTACA 1783409 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||||||||| | ||||| || |||||||| ||||||||| | ||||| || Sbjct 1783408 TCTCAGAGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCAGCGCGCCTCTGGCA 1783349 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 |||||| || ||| | ||| | || ||||| || || || || || || | Sbjct 1783348 GCTGCACCTCGCACATGAAGCGCTCGACGAGGTTCTCGTTCACAATGCCGTCGCTGGCGG 1783289 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGC 48608 | |||||||| ||||| || || | || || |||| ||| |||| | |||| Sbjct 1783288 CGAAGAAGGCGAGGACGTGCTTGATAAAGTGCTGCTCCGTGTCCTTGAGGCCGCGCCAGT 1783229 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668 | | ||| |||||| || || ||| | ||||||||||| |||| || || | Sbjct 1783228 GGTCGAGGTCGCGCGACAGGTCAACCTCCTCCGCGGTCCAGAAGGAGGCGACGGCCTTCT 1783169 Query 48669 TGTACATG 48676 |||||||| Sbjct 1783168 TGTACATG 1783161 >seq4 Length=2372320 Score = 244 bits (270), Expect = 2e-59 Identities = 329/456 (72%), Gaps = 4/456 (1%) Strand=Plus/Minus Query 213776 TGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGG 213835 |||||| |||||||| |||| || ||| | || | || ||| |||||||| || Sbjct 2278576 TGCGGG-CACATGAGCGTCCACTCTTCGTTGGCCTCAACGCGCTTCATAAACAGGTCGGG 2278518 Query 213836 GACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCG 213895 |||||||||||| ||| ||||| | || | | ||| || || || | ||| || Sbjct 2278517 CACCCACAGCGCGAAGAAGAGGTCGCGGGCACGCTGCTCCTCAACACCGGTGTTCTTCTT 2278458 Query 213896 CAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCC 213955 ||| || ||||||||||||||||| |||||||||||||| | ||| | |||||||||||| Sbjct 2278457 CAGCTCGAGAAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTACACGGCAAAGGCGCC 2278398 Query 213956 CGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGAC 214012 |||| |||| ||||||||||| || | ||| ||||||| | |||||| | Sbjct 2278397 GGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCAT 2278338 Query 214013 GGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAG 214072 ||| || |||||||| || || |||||||| || || || ||||||||| ||| | | Sbjct 2278337 GGGCACGAGCCCGTTCGAGTGGCCGTTGGTGCCGGCAATGTACGAGCCGCTGGCGCGGAT 2278278 Query 214073 GTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCAC 214132 |||| || | || || ||||| ||||| ||||||||||||||| || | | | Sbjct 2278277 GTTGTGCACGCTAAGGCCAATGCCGCCGGCTGTCTTGGAGATCATGGCACACGTCTTGAG 2278218 Query 214133 AGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAG 214192 || || |||||| | |||||||| || | | | | || | ||||||||| || Sbjct 2278217 CGTATCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGGAGGAAGCAGCTGCTCAG 2278158 Query 214193 CTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGG 214228 ||| || ||| || |||||||||||| ||||| || Sbjct 2278157 CTGCGGGATGGGCGTGCCAGAGTTGAACAGCGTTGG 2278122 Score = 127 bits (140), Expect = 4e-24 Identities = 358/541 (66%), Gaps = 23/541 (4%) Strand=Plus/Minus Query 212894 CTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAA 212953 ||||| || ||| ||| || | |||||| || || |||||||| | | | ||| | Sbjct 2279851 CTTGAGCAAGTGCTTGTTCACCACCTGGAACTCGCCAGAGAGCACGCGGCGCGAGTAGAT 2279792 Query 212954 GTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGT 213013 ||| ||||||||||| || ||||||||| || |||||||| |||||| || || Sbjct 2279791 GTTGCTCGTGTAGGGCTCAATCGACTCGTTGTTGCCGAGAATCTGGGCAGTGGACGCGGT 2279732 Query 213014 GGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC---CG 213070 ||||||||| || ||||| || ||| | | |||| || | | |||| || Sbjct 2279731 GGGCATGGGCGCAACCAGCAGCGAGTTGCGAATGCCGTCCT---TCTTCACGCGCTCGCG 2279675 Query 213071 AAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAA 213130 |||| |||| |||| |||||||| | |||||| | |||||||||||| Sbjct 2279674 AAGCGACTCCCAATCCC---------ACAGGTCCGTGGGCTTCACATCCCACATGTCAAA 2279624 Query 213131 CTGCAAGATGCCTTTGCTCACG-GGGC-TGCCCTGGTAAGAGGAGTAGGGGCCATGCTCC 213188 ||| | ||||| | | | | |||| ||||| ||| ||| || || | | Sbjct 2279623 CTGAAGAATGCCCT--CAGAGGTGGGCGAGCCCTCAAAAGTCTCGTATGGCCCCTCAACG 2279566 Query 213189 TTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTG 213248 || | ||| ||| || | ||||| ||| ||||||||| || || |||| | | Sbjct 2279565 GACGCAATCTCCGTGGAGGCTTCGAGGGCGCCGTGGTAGATGGTCTCGAAAATCTTGCGG 2279506 Query 213249 TTGAGCTTCTTGGCCTCTGGGGACGT-GAAGGGCATCATCATGCGTTGGAACACATCAGC 213307 || | || ||||| | | || ||||| | ||| | ||| | || || Sbjct 2279505 TTCACCTCGCGTGCCTC-GTCGCTGTCAAAGGGAAGACGCATCAGGATAAACGCGTCGGC 2279447 Query 213308 CAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCT 213366 || ||||| || || ||||| ||||| | ||| | || ||| |||||| | || ||| Sbjct 2279446 AAGGCCCTGCACGCCAATGCCAATGGGGCGGTGGCGCATGTTGGACTTGCGCGC-CTCTG 2279388 Query 213367 CCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGA 213426 | ||||| ||||| |||||| ||||||||||||||||| ||| ||| ||||| | Sbjct 2279387 GGACAGGGTAGTAGTTGATGTCGATAATCTTGTTGAGGTTGCGCGTGAGCACCTTGGTAA 2279328 Query 213427 C 213427 | Sbjct 2279327 C 2279327 >seq12 Length=1669363 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 38874 TTCGCGCTGCTGAATGCCACACCGGAGAATGCGTACCTGTCCAACACCAGGCTCGTCCCC 38933 || |||||| ||||||| || ||||| || ||||| | ||| | |||||| | || Sbjct 961076 TTTGCGCTGGTGAATGCAACGCCGGAAAAAGCGTAGCGGTCAATGACCAGGGACACGCCG 961017 Query 38934 CGTTCCAGCTTCTGCTTCATCAGGGGCACCAGCTCCCACCTGTTGGCGGAGAAGAGCAGG 38993 | | ||| |||||||||| | | ||||||||||||| ||| ||||||||||||| | Sbjct 961016 CTCTTCAGGGCCTGCTTCATCTGCGAGACCAGCTCCCACCGGTTTGCGGAGAAGAGCAAG 960957 Query 38994 TGGACTGCGTGGTCGTCCAGCTC 39016 || ||||||| ||||||||||| Sbjct 960956 TGCGCTGCGTGATCGTCCAGCTC 960934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531006799360