Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq8 255 1e-62 seq4 194 3e-44 >seq8 Length=1951132 Score = 255 bits (282), Expect = 1e-62 Identities = 555/828 (67%), Gaps = 29/828 (4%) Strand=Plus/Plus Query 25486 ATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCCAAGGAC 25545 |||||||||||||| ||| ||||||||| || ||| |||| ||| | ||| Sbjct 1783162 ATGTACAAGAAGGCCGTCGCCTCCTTCTGGACCGCGGAGGAGGTTGACCTGTCGCGCGAC 1783221 Query 25546 ATGGACGGCTGGTACGCTCTATCCAAAGAC---GAGCAGCATTTTCTCAAGTACGTGTTG 25602 | ||| |||| || || ||| ||| |||||||| ||| ||||| |||| | Sbjct 1783222 CTCGACCACTGGCGCGGCCT---CAAGGACACGGAGCAGCACTTTATCAAGCACGTCCTC 1783278 Query 25603 GCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGG 25662 || ||||| || ||| || || || ||||||||||| || |||| | |||| | Sbjct 1783279 GCCTTCTTCGCCGCCAGCGACGGCATTGTGAACGAGAACCTCGTCGAGCGCTTCATGTGC 1783338 Query 25663 GAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTG 25722 || |||||| ||||| || |||||||| |||||||| || || || | Sbjct 1783339 GAGGTGCAGCTGCCAGAGGCGCGCTGCTTCTACGGCTTCCAGATTATGATTGAGAACATC 1783398 Query 25723 CACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCG-AGAG 25778 ||||||||| |||| | ||| || || |||||||| | ||| ||| | ||| Sbjct 1783399 CACTCTGAGATGTACTC---GCTGCTCATCGACACGTACATCAACGACC-CGCAGGAGAA 1783454 Query 25779 AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGC 25838 | ||| || ||| | ||| | ||| | ||||| | ||||| |||||| Sbjct 1783455 GCACATGCTCTTCAACGCCGTTGAGACGCTGCCCGCCGTCAAGCGCAAGGCCGAGTGGGC 1783514 Query 25839 CATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGC 25898 |||| |||||| || | || | || | |||| ||||| | || |||||||| || Sbjct 1783515 CATGCGCTGGATCGACCACAAGCGGGCCTCCTTTGCGGAGCGCGTCGTCGCCTTTGCCGC 1783574 Query 25899 TGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGG 25958 ||| ||||||||||| |||||||| ||||| || |||||||||||||||||| || || Sbjct 1783575 TGTCGAGGGCATCTTCTTCAGCGGGTCGTTCGCCGCCATCTTCTGGCTCAAGAAGCGCGG 1783634 Query 25959 GACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAG 26018 ||||||||| ||| |||||||||||||||||| | |||||||| || ||| | Sbjct 1783635 CCTCATGCCCGGCCTGACGCAGTCCAACGAGCTCATCAGCCGCGACGAGGGCCTGCACTG 1783694 Query 26019 AGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACA--AACCTTCTCAA-GAGAC 26075 || ||||||||||| || | | | |||| |||| || | | ||| ||| Sbjct 1783695 CGACTTTGCCTGCCT------CATGTTCTCCATGCTGCACAAGAAGCCGCCCAAGGAGCG 1783748 Query 26076 CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNN 26135 |||| | ||||||| || || || ||||| ||| |||||||| Sbjct 1783749 CGTCATTGGCATCATCATGGACGCCGTCGAGATTGAGCAGGAGTTTTTGACCGAGGCGCT 1783808 Query 26136 NNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGC 26195 | ||||||||| || |||||| || | |||||||||| ||| | Sbjct 1783809 GCCCGTCTCCCTCCTCGGCATGAACTCCACTCTCATGCGCGAGTACATTGAGTTTGTCTC 1783868 Query 26196 CGACCATCTGCTGTGCCAG-CTGGGACTCGCCAGACTCTACAGTACGC--CTAACCCGTT 26252 ||||| || || | ||| || || || || |||||| |||| | ||||| || Sbjct 1783869 CGACCGCCTCCT-CGTCAGCCTCGGCTACGACAAGGTCTACA--ACGCCACCAACCCCTT 1783925 Query 26253 CGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGA 26300 | ||||||||| ||||| || | || || ||||||||||||||||| Sbjct 1783926 CCCCTTTATGGAGAACATTTCCATCGAGGGCAAGACCAACTTCTTTGA 1783973 >seq4 Length=2372320 Score = 194 bits (214), Expect = 3e-44 Identities = 321/456 (70%), Gaps = 8/456 (2%) Strand=Plus/Minus Query 221954 TCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG-GCGGGACACATCAGACT 222012 ||||||| || ||||| | || || || || ||| | ||||| ||||| || | Sbjct 2278618 TCAAACTCGTCGCCGTATGTGTCCGAGAGACCGGGGCACTCGTGCGGG-CACATGAGCGT 2278560 Query 222013 CCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAA 222072 ||| | | |||| | | || | || ||| || ||||| || | ||||||||| || Sbjct 2278559 CCACTCTTCGTTGGCCTCAACGCGCTTCATAAACAGGTCGGGCACCCACAGCGCGAAGAA 2278500 Query 222073 GAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAA 222132 ||| || | || ||||||||||| || ||| |||| ||| |||| || | ||| ||||| Sbjct 2278499 GAGGTCGCGGGCACGCTGCTCCTCAACACCGGTGTTCTTCTTCAGCTCGAGAAAGTCAAA 2278440 Query 222133 AATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACC 222192 ||||| |||||||||||||| || || ||||| | |||||||| ||||||||||| || Sbjct 2278439 GATGTCTGCGTGCCACGGCTCGAGGTACACGGCAAAGGCGCCGGGCCGCTTGTTGCCGCC 2278380 Query 222193 CTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGA 222252 ||| || || | | || |||||| | ||| || | || || || ||||| || Sbjct 2278379 CTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATGGGCACGAGCCCGTTCGA 2278320 Query 222253 TCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC--ATG 222310 | ||||||||||| |||||||| |||| ||| | | ||| ||| | | | Sbjct 2278319 GTGGCCGTTGGTGCCGGCAATGTACGAGCCGCTGGCGCGGATGTT--GTGCACGCTAAGG 2278262 Query 222311 CCGATACCACCGGCGTGT-TTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCC 222369 || || || ||||| ||| || ||||||||||| || ||||||| || || |||||| Sbjct 2278261 CCAATGCCGCCGGC-TGTCTTGGAGATCATGGCACACGTCTTGAGCGTATCGTAGATGCC 2278203 Query 222370 CTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACA 222405 ||| || ||| ||||| | | | || || || || Sbjct 2278202 CTCGATGCTGTCGTCCTTCATGGTGAGGAGGAAGCA 2278167 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 221068 CTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCACTTG 221127 ||| || | ||| |||||| |||| | || |||||| || ||||||||||||||| || Sbjct 2279884 CTCATCGGACCACAGACCCATCTCAACAAGGTCCTTGAGCAAGTGCTTGTTCACCACCTG 2279825 Query 221128 GAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCTCTC 221187 ||| || || |||||||| | | | ||| | ||| ||| | || || || ||| Sbjct 2279824 GAACTCGCCAGAGAGCACGCGGCGCGAGTAGATGTTGCTCGTGTAGGGCTCAATCGACTC 2279765 Query 221188 GTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACTGTT 221247 ||||||||| || ||||| || ||| |||||||||||||| || |||||||| ||| Sbjct 2279764 GTTGTTGCCGAGAATCTGGGCAGTGGACGCGGTGGGCATGGGCGCAACCAGCAGCGAGTT 2279705 Query 221248 GCG 221250 ||| Sbjct 2279704 GCG 2279702 Score = 93.3 bits (102), Expect = 8e-14 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478 ||||| |||||||||||||||| || ||| | ||| | ||| | |||||| | Sbjct 2279541 AGGGCGCCGTGGTAGATGGTCTCGAAAATCTTGCGGTTCAC-CTCGCGTGCCTCGTC-GC 2279484 Query 221479 AGTGAA-GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 || || ||| | ||||| || ||| ||||||| || ||||| || || || || | Sbjct 2279483 TGTCAAAGGGAAGACGCATCAGGATAAACGCGTCGGCAAGGCCCTGCACGCCAATGCCAA 2279424 Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGA 221597 |||| | ||| | | ||||||| | ||| ||||| || || || |||||| ||||| Sbjct 2279423 TGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCTGGGACAGGGTAGTAGTTGATGTCGA 2279364 Query 221598 TCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGAT 221654 | | ||||||||||| | |||| || || |||||| |||||||| || || Sbjct 2279363 TAATCTTGTTGAGGTTGCGCGTGAGCACCTTGGTAACCTCGTGCAGCTTCTTGTAAT 2279307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843011973760