Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq10 87.8 2e-12 >seq10 Length=1852485 Score = 87.8 bits (96), Expect = 2e-12 Identities = 166/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 |||||||||||| | || ||||| || || || || || || || || || | ||||| | Sbjct 1590559 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACACTTGAGGTTG-AGCCATC 1590501 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || |||||||| ||||| || || || || || || || Sbjct 1590500 TGACTCGATTGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 1590441 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | |||||||| || || ||||| ||||| | | || || || || Sbjct 1590440 GCAGCGGCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACAA 1590381 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||| || ||||| || || ||| | ||| |||| ||||||| ||| ||||||||| Sbjct 1590380 CATCCAGAAGGAGAGCACGCTTCACCTTGTGCTGCGCCTGCGCGGTGGC--AACTGAGCC 1590323 Query 24943 A 24943 | Sbjct 1590322 A 1590322 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || ||||| || || || || || ||||| || || || ||| Sbjct 1591018 ACCATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACGCTTGAGGTTGA-GCC 1590960 Query 24761 ACC-GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 | | ||| | | || | || || |||||||| ||||| || || || || || || Sbjct 1590959 ATCTGACTCGATTGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGA 1590900 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 || || || | ||||||||||| || ||||| ||||| | | || || || Sbjct 1590899 CCAGCAGCGGCTTATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTA 1590840 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || ||| | ||| | || ||||||| ||| Sbjct 1590839 CAACATCCAGAAGGAGAGCACGCTTCACCTTGTGCTTCGCCTGCGCGGTGGC 1590788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896733947120