Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq29 104 2e-17 >seq29 Length=915651 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 34504 AGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCT 34563 ||||||||||| |||||| ||||||| |||||| ||||||||||| |||||||| ||| Sbjct 533145 AGCGCCTTGGCAATTTCGCTCATGTTGGGGATGACGGTCTTGATGCCATTGCCCTTGCCT 533086 Query 34564 TCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTC 34610 || |||||||| | | ||||| |||||||||||||| | ||| Sbjct 533085 TCAACCTTGGCAATCACGGCAGGCATCTTGTAGCGGTAGAAAGGGTC 533039 Score = 89.7 bits (98), Expect = 4e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 ||||| |||||||||||||| || ||||||| ||||||||| |||| || || || Sbjct 533570 AGCTCTGTCTCCGGGTTGTCGCAGCTGGGACACAGCACAAACTTCTGGATAAACCCGTCG 533511 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 ||| || || | | | | | ||| | ||||||||| ||| | || ||||| || Sbjct 533510 AGCGTGTTTTGCAGGTCATCTGCCGTGTGCGCGCCGTTGACAATGTAGCGGTCGTTCTTC 533451 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGT 34486 | || | || || |||||||| ||||| || |||||||| ||||||| Sbjct 533450 TCGTCCATCTTGGTCTGCGCGCCAAGCTCAATGCCAAAGTACTTGGTCGGGT 533399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412840825147922