Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq8 273 2e-68 seq4 248 8e-61 seq10 141 9e-29 >seq8 Length=1951132 Score = 273 bits (302), Expect = 2e-68 Identities = 572/837 (68%), Gaps = 54/837 (6%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || |||||||| ||||| |||||| ||||| || |||||||| || |||||||| | Sbjct 1783995 CTGGTACTCGCTCACGCGGCGCTCAAAGAAGTTGGTCTTGCCCTCGATGGAAATGTTCTC 1783936 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAA-CTGTACGAGCA 120469 |||||| ||| |||||| | ||||| || || | ||| | ||| ||||| | Sbjct 1783935 CATAAAGGGGAAGGGGTTGGTGGCGTTGTAGACCTTGTCGTAGCCGAGGCTG-ACGAGGA 1783877 Query 120470 GTCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAAC 120528 | ||||| | ||||||||||||||||||| |||| || || | ||||||||| || | Sbjct 1783876 GGCGGTCGGAGACAAACTCAATGTACTCGCGCATGAGAGTG-GAGTTCATGCCGAGGAGG 1783818 Query 120529 GCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588 | || |||| |||| || |||||||||| |||||| || || || ||| ||| ||| Sbjct 1783817 GAGACGGGCAGCGCCTCGGTCAAAAACTCCTGCTCAATCTCGACGGCGTCCATGATGATG 1783758 Query 120589 GCGA----GCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACA---G 120641 | | || ||| ||| | ||||||| ||| || ||| | Sbjct 1783757 CCAATGACGCGCTCCTTGGGCGG-CTTCTTGTGCAGCATGG---------AGAACATGAG 1783708 Query 120642 GCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAG 120701 ||| |||||||| |||||||||||||||||| || ||||||||| |||||| Sbjct 1783707 GCAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGACTGCGTCAG 1783648 Query 120702 GCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAA-AAGA 120760 ||||||||||| ||| | |||||| |||| |||||||| || | |||| |||| Sbjct 1783647 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGGCGAA-CGACCCGCTGAAGA 1783589 Query 120761 ACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGT 120820 | | |||||| || |||||||||||| | |||||| || || | ||| |||| || Sbjct 1783588 AGATGCCCTCGACAGCGGCAAAGGCGACGACGCGCTCCGCAAAGGAGGCCCGCTTGTGGT 1783529 Query 120821 CGATCCACTTCATGGCCCACTCGGCCTTTTTGCGC---ACGCACGGCATCCGCTCGAACG 120877 ||||||| |||||||||||||||| |||||| ||| |||| | ||| | | Sbjct 1783528 CGATCCAGCGCATGGCCCACTCGGCC---TTGCGCTTGACGGCGGGCAGCGTCTCAACGG 1783472 Query 120878 CGTTCAGCAGCATGTCGCGCTCGCCCTCCTCCGCAATCAGCTGATG--------GATGAG 120929 |||| | ||||||| ||| ||||| || || | ||||| |||||| Sbjct 1783471 CGTTGAAGAGCATGT---GCT---TCTCCTGCG-GGTC-GTTGATGTACGTGTCGATGAG 1783420 Query 120930 CAGATTGTACATTTCCGTGTGCACGCACTCGATCAGCACTTGCTGGTTGTAAAAGTACTG 120989 ||| |||||| || | ||| | | ||| |||| | || | ||| ||| | | Sbjct 1783419 CAGCGAGTACATCTCAGAGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCAGCG 1783360 Query 120990 CGCCTC---CAGCTCGGGCACCGCCCGCTGCATGTACTCGATAAGGTTAATATTCACGAT 121046 |||||| ||||| ||||| | | | | | ||||| ||||| ||||| || Sbjct 1783359 CGCCTCTGGCAGCT---GCACCTCGCACATGAAGCGCTCGACGAGGTTCTCGTTCACAAT 1783303 Query 121047 ACTGTCGGCGGCGGCGAAGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGT 121106 | |||| |||||||||||| || || ||||||||||||||||| |||| |||| | Sbjct 1783302 GCCGTCGCTGGCGGCGAAGAAGGCGAGGACGTGCTTGATAAAGTGCTGCTCCGTGTCCTT 1783243 Query 121107 GAGCTTGTGCGCAAAATCGTCATAGTCCTTGGACAGGTCGACCTCCTCCACCTTCCA 121163 ||| | || | | ||| ||| |||||||| ||||||||| | |||| Sbjct 1783242 GAGGCCGCGC---CAGTGGTCGAGGTCGCGCGACAGGTCAACCTCCTCCGCGGTCCA 1783189 >seq4 Length=2372320 Score = 248 bits (274), Expect = 8e-61 Identities = 357/493 (72%), Gaps = 13/493 (3%) Strand=Plus/Minus Query 149058 TACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCAC 149117 ||||| ||||| ||| | |||||||| || |||||||||||||| |||||||||| Sbjct 2278627 TACAGGCGCTCAAACTCGTCGCCGTATGTGTCCGAGAGACCGGGGCACTCGTGCGGGCAC 2278568 Query 149118 ATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGC 149177 ||||||| |||| | ||| || | ||||||||||||||||| ||||||||||| ||| Sbjct 2278567 ATGAGCGTCCACTCTTCGTTGGCCTCAACGCGCTTCATAAACAGGTCGGGCACCCACAGC 2278508 Query 149178 GCGTACATGAGGTCGCGCGCCTTGCAG-TCTTCGGCGCCCATGTTGCGGCGCAGGTTGAG 149236 ||| | | ||||||||| || || | || || | || |||| ||| | ||| Sbjct 2278507 GCGAAGAAGAGGTCGCGGGCAC-GCTGCTCCTCAACACCGGTGTTCTTCTTCAGCTCGAG 2278449 Query 149237 CACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT 149296 | | || ||||| |||||||||||||| | |||||| || | ||||| ||||| Sbjct 2278448 AAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTACACGGCAAAGGCGCCGGGCCGCTT 2278389 Query 149297 G---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAAT 149353 | |||||||||||||||| |||| || ||||||| ||||| || | ||| || | | Sbjct 2278388 GTTGCCGCCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATGGGCACGAG 2278329 Query 149354 GCCACTGGCAGTG-CCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGCACTTTGTG 149410 || | | |||| ||||| || | |||| ||| ||||| || || | ||||| Sbjct 2278328 CCCGTTCG-AGTGGCCGTTGGTGCCGGCAATGTACGA--GCCGCTGGCGCGGATGTTGTG 2278272 Query 149411 CACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCA-GTCGCCGAGCGTCG 149469 |||| | | ||| ||||||||| | ||| ||||| || || ||| |||||| Sbjct 2278271 CACGCTAAGGCCAATGCCGCCGGCTGTCTTGGAGATCATGGCACACGTCTT-GAGCGTAT 2278213 Query 149470 AGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCG 149529 |||||||||||||||||||||| ||||||||| || || ||||| || || |||| Sbjct 2278212 CGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGGAGGAAGCAGCTGCTCAGCTGCG 2278153 Query 149530 GAAAACGCGTGCC 149542 | | ||||||| Sbjct 2278152 GGATGGGCGTGCC 2278140 Score = 223 bits (246), Expect = 3e-53 Identities = 376/535 (70%), Gaps = 12/535 (2%) Strand=Plus/Minus Query 148239 AGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA 148298 ||||| | || || | || ||||||||||| |||||||| | ||||||||| ||| Sbjct 2279856 AGGTCCTTGAGCAAGTGCTTGTTCACCACCTGGAACTCGCCAGAGAGCACGCGGCGCGAG 2279797 Query 148299 TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTT 148358 || | ||||||||| | || |||| ||||||||||||||| | |||||| || || | Sbjct 2279796 TAGATGTTGCTCGTGTAGGGCTCAATCGACTCGTTGTTGCCGAGAATCTGGGCAGTGGAC 2279737 Query 148359 GCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGC 148418 || ||||||||| ||| ||||||||||||||||| | ||| || || | |||| Sbjct 2279736 GCGGTGGGCATGGGCGCAACCAGCAGCGAGTTGCGAATGCCGTCCTTCTTCA---CGCGC 2279680 Query 148419 T---TCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGC 148475 | || | | |||| ||||| || || || |||| | ||||||||| |||| Sbjct 2279679 TCGCGAAGCGACTCCCAATCCCACAGGTCCGTGGGCTTCACATCCCACATGTCAAACTGA 2279620 Query 148476 AGAATGCCGCGGCTAGCGGGGC-TGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGC 148534 |||||||| | || |||| |||||| | | ||| || || | | | ||| Sbjct 2279619 AGAATGCC-CTCAGAGGTGGGCGAGCCCTCAAAAGTCTCGTATGGCCCCTCAACGGACGC 2279561 Query 148535 CAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG 148594 | || | || ||||| ||||||| ||| || |||||| ||| | | ||| | Sbjct 2279560 AATCTCCGTGGAGGCTTCGAGGGCGCCGTGGTAGATGGTCTCGAAAATCTTGCGGTTCAC 2279501 Query 148595 C-AGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGC 148653 | ||| ||| ||||| || | || | ||||| | | | ||||||||||||||||| Sbjct 2279500 CTCGCG-TGCCTCGTCGCTGTCAAAGGGAAGACGCATCAGGATAAACGCGTCGGCAAGGC 2279442 Query 148654 CCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT-CGAGC 148712 |||| ||||| | ||||||||| ||||| |||||||| |||||| |||| || Sbjct 2279441 CCTGCACGCCAATGCCAATGGGGCGGTGGCGCATGTTGGACTTGCGCGC-CTCTGGGACA 2279383 Query 148713 GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAA 148767 || |||| |||| |||||| ||||||| || |||||| | |||||| |||| Sbjct 2279382 GGGTAGTAGTTGATGTCGATAATCTTGTTGAGGTTGCGCGTGAGCACCTTGGTAA 2279328 Score = 104 bits (114), Expect = 2e-17 Identities = 155/216 (72%), Gaps = 12/216 (6%) Strand=Plus/Minus Query 147953 GCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGA 148012 |||||| ||||||||||||||||| |||||| ||| ||||| ||||| |||| Sbjct 2280403 GCGCAGGTAGTACATGCCCGTCTTAAGGCCCCGCTTCCACGCGTAAAAGTGCATGGACG- 2280345 Query 148013 CATGAGCGTGT--ACGTCGGGTGCGGC-ACAAACAGATTAAACGACTGGCTCTGGTCAAT 148069 ||||| || | || ||| ||| | || || ||||||||||||||||| || Sbjct 2280344 --TGAGCTTGCCAAAGTTGGGGTCGGAGATGTGCACGTTGAACGACTGGCTCTGGTCGAT 2280287 Query 148070 GAACGCGCCACGGTCAGCGGCCATTTCAATGAG---TCGCTTTATCTTCATCTCCCAGGC 148126 || ||||| || ||||| ||||| ||||| || |||| | |||||| | Sbjct 2280286 AAAGGCGCCGCGATCAGCAGCCATGTCAATCAGCGTACGCT---GGGAGAGCTCCCACAC 2280230 Query 148127 CGTCTTGTACAGCCGCTTGATATGATCGGGAATGCC 148162 |||||||||||| |||||| | |||||||||||| Sbjct 2280229 CGTCTTGTACAGGGCCTTGATGTCATCGGGAATGCC 2280194 >seq10 Length=1852485 Score = 141 bits (156), Expect = 9e-29 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTA 133528 ||| ||||| || ||||| |||| || |||| |||||| ||||||||||| || | Sbjct 1590368 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 1590427 Query 133529 AATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTG 133588 ||||||||||||||||| || |||||||| |||||||| |||||| ||||| | Sbjct 1590428 GATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 1590487 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 ||||| || ||| | ||||| || || | |||| ||| ||||| ||||| || || || Sbjct 1590488 CTCAATCGAGTCAGATGGCTCAACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCAC 1590547 Query 133649 GAAAATCTGCATG 133661 || ||||||||| Sbjct 1590548 AAAGATCTGCATG 1590560 Score = 141 bits (156), Expect = 9e-29 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTA 133528 ||| ||||| || ||||| |||| || |||| |||||| ||||||||||| || | Sbjct 1590596 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 1590655 Query 133529 AATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTG 133588 ||||||||||||||||| || |||||||| |||||||| |||||| ||||| | Sbjct 1590656 GATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 1590715 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 ||||| || ||| | ||||| || || | |||| ||| ||||| ||||| || || || Sbjct 1590716 CTCAATCGAGTCAGATGGCTCAACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCAC 1590775 Query 133649 GAAAATCTGCATG 133661 || ||||||||| Sbjct 1590776 AAAGATCTGCATG 1590788 Score = 138 bits (152), Expect = 1e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTA 133528 ||| ||||| || ||||| |||| || |||| |||||| ||||||||||| || | Sbjct 1590824 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAA 1590883 Query 133529 AATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTG 133588 || |||||||||||||| || |||||||| |||||||| |||||| ||||| | Sbjct 1590884 GATAAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 1590943 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 ||||| || ||| | ||||| || || | |||| ||| ||||| ||||| || || || Sbjct 1590944 CTCAATCGAGTCAGATGGCTCAACCTCAAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 1591003 Query 133649 GAAAATCTGCATGG 133662 || |||||||||| Sbjct 1591004 AAAGATCTGCATGG 1591017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419869414960