Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4 212 6e-50 >seq4 Length=2372320 Score = 212 bits (234), Expect = 6e-50 Identities = 331/466 (71%), Gaps = 13/466 (3%) Strand=Plus/Minus Query 147675 GCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAG 147734 ||||||| |||||| |||||||| |||||||||||||||||||| || | || Sbjct 2278649 GCCCTCGGCCTCGTACTTCTCGTACAGGCGCTCAAACTCGTCGCCGTATGTGTCCGAGAG 2278590 Query 147735 GCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCAT 147794 ||||| |||| ||||| ||||| |||| |||| |||| || | |||||| ||| Sbjct 2278589 ACCGGGGCACTCGTGCGGGCACATGAGCGTCCACTCTTCGTTGGCCTCAACGCGCTTCAT 2278530 Query 147795 AAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC--GCGCTTTGCAATCCTCGGCG 147852 |||||| || ||||||||||||||| | | || |||| || | ||| ||||| | Sbjct 2278529 AAACAGGTCGGGCACCCACAGCGCGAAGAAGAGGTCGCGGGCACGCTGC--TCCTCAACA 2278472 Query 147853 CCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAG 147912 || |||| |||| | || | | | ||||||| |||||||| || || | ||| Sbjct 2278471 CCGGTGTTCTTCTTCAGCTCGAGAAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTAC 2278412 Query 147913 ACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATGGCGCACCATGTTGTTA 147969 ||||| | || || ||| || |||||||||||||| | |||| || ||||||| Sbjct 2278411 ACGGCAAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCCGTGTTGTTG 2278352 Query 147970 AACACGCGCACCATGGGTTCCAGGCCGCTCGCAGT-GCCGTTGGTGGAATTGATCTTGCT 148028 |||||||||| |||||| | || ||| ||| ||| |||||||||| || | Sbjct 2278351 AACACGCGCAGCATGGGCACGAGCCCGTTCG-AGTGGCCGTTGGTGCCGGCAATGTACGA 2278293 Query 148029 GCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGC 148088 ||||| ||| || | | ||||||| ||| ||||||||||||| | ||| || || | Sbjct 2278292 GCCGCTGGCGCGGATGTTGTGCACGCTAAGGCCAATGCCGCCGGCTGTCTTGGAGAT--C 2278235 Query 148089 AGCGCAATCGCC--CAATGTCGTGTAGATGCCGTCGATGCTGTCGT 148132 | ||| || | | || ||||||||| ||||||||||||| Sbjct 2278234 ATGGCACACGTCTTGAGCGTATCGTAGATGCCCTCGATGCTGTCGT 2278189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610282523440