Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq10 109 5e-19 >seq10 Length=1852485 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 || ||||| || | | || ||| | || | ||| |||||||| || |||||||| ||| Sbjct 1590330 TTGCCACCGCGCAGGCGCAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCG 1590389 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 || || || |||| || |||||||| || ||||| || | |||||||||||| | Sbjct 1590390 CTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGC 1590449 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 || | || |||||||||| |||||| ||| | | | | || ||| | || Sbjct 1590450 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCA 1590509 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| || || || |||| || |||||||| |||||||| Sbjct 1590510 ACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1590559 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 35539 CGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACC 35598 ||| |||||||| || |||||||| ||| || || || |||| || |||||||| || Sbjct 1590818 CGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCC 1590877 Query 35599 CGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTT 35658 ||||| || | |||||||||||| | || | || |||||||||| |||||| ||| Sbjct 1590878 GGCAAAGATAAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTT 1590937 Query 35659 CAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718 | | | | || ||| | || ||||| | |||||| || || || |||| || Sbjct 1590938 GACGTTCTCAATCGAGTCAGATGGCTCAACCTCAAGCGTGATGGTCTTGCCAGTCAGCGT 1590997 Query 35719 TTTCACAAATATCTGCAT 35736 |||||||| |||||||| Sbjct 1590998 CTTCACAAAGATCTGCAT 1591015 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 35539 CGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACC 35598 ||| |||||||| || |||||||| ||| || || || |||| || |||||||| || Sbjct 1590590 CGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCC 1590649 Query 35599 CGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTT 35658 ||||| || | |||||||||||| | || | || |||||||||| |||||| ||| Sbjct 1590650 AGCAAAGATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTT 1590709 Query 35659 CAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718 | | | | || ||| | || ||||| | ||||| || || || |||| || Sbjct 1590710 GACGTTCTCAATCGAGTCAGATGGCTCAACCTCAAGTGTGATGGTCTTGCCAGTCAGCGT 1590769 Query 35719 TTTCACAAATATCTGCAT 35736 |||||||| |||||||| Sbjct 1590770 CTTCACAAAGATCTGCAT 1590787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450792732222320