Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4 150 2e-31 seq10 96.9 4e-15 >seq4 Length=2372320 Score = 150 bits (166), Expect = 2e-31 Identities = 277/400 (69%), Gaps = 7/400 (2%) Strand=Plus/Plus Query 7723 CTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGAT-TGCGCCAA 7781 || |||||| || ||||||||||| ||||| ||| | ||||| | || || |||| Sbjct 2278176 CTCACCATGAAGGACGACAGCATCGAGGGCATCTACGATACGCT-CAAGACGTGTGCCAT 2278234 Query 7782 TATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAG 7841 || ||||| | |||||| || || || | ||| || || | ||||||| ||| Sbjct 2278235 GATCTCCAAGACAGCCGGCGGCATTGGCCTTAGCGTGCACAACATCCGCGCCAGCGGCTC 2278294 Query 7842 CCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAA 7901 ||| | ||||||||| | | | ||| | | ||||||| ||||||||||||| Sbjct 2278295 GTACATTGCCGGCACCAACGGCCACTCGAACGGGCTCGTGCCCATGCTGCGCGTGTTCAA 2278354 Query 7902 TAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTA 7958 ||| ||| ||| | || |||||||| || ||||| |||||| |||| | || Sbjct 2278355 CAACACGGCGCGCTACGTCGACCAGGGCGGCAACAAGCGGCCCGGCGCCTTTGCCGTGTA 2278414 Query 7959 TTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTG 8018 | |||||||||||||| ||||| | | | || | ||| |||| ||| Sbjct 2278415 CCTCGAGCCGTGGCACGCAGACATCTTTGACTTTCTCGAGCTGAAGAAGAACACCGGTGT 2278474 Query 8019 CGAAGA-CAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGA 8077 || || |||| || ||||| || ||||||| ||||||||||||| |||||||||| Sbjct 2278475 TGAGGAGCAGC-GTGCCCGCGACCTCTTCTTCGCGCTGTGGGTGCCCGACCTGTTTATGA 2278533 Query 8078 GGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCC 8117 ||||||| | | ||| | | ||| ||||||||||||| Sbjct 2278534 AGCGCGTTGAGGCCAACGAAGAGTGGACGCTCATGTGCCC 2278573 >seq10 Length=1852485 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| |||||| ||||| || ||||||||||||| | ||| | Sbjct 1590342 AGGCGCAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 1590401 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| ||||| || | |||||||| || ||||| ||||| || Sbjct 1590402 CCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCC 1590461 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| || | | ||| || | || || || || || Sbjct 1590462 TTGTCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAACCTCAAGTGTG 1590521 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || || || || ||||| Sbjct 1590522 ATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1590559 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| |||||| ||||| || ||||||||||||| | ||| | Sbjct 1590570 AGGCGAAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 1590629 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| ||||| || | |||||||| || ||||| ||||| || Sbjct 1590630 CCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCC 1590689 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| || | | ||| || | || || || || || Sbjct 1590690 TTGTCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAACCTCAAGTGTG 1590749 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || || || || ||||| Sbjct 1590750 ATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1590787 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| |||||| ||||| || ||||||||||||| | ||| | Sbjct 1590798 AGGCGAAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 1590857 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| ||||| || | |||||||| || ||||| ||||| || Sbjct 1590858 CCGTCCTCAAGCTGCTTGCCGGCAAAGATAAGCCGCTGCTGGTCAGGCGGGATGCCCTCC 1590917 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| || | | ||| || | || || || || || Sbjct 1590918 TTGTCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAACCTCAAGCGTG 1590977 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || || || || ||||| Sbjct 1590978 ATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1591015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397427108080