Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4 118 9e-22 seq10 98.7 8e-16 >seq4 Length=2372320 Score = 118 bits (130), Expect = 9e-22 Identities = 264/396 (67%), Gaps = 3/396 (1%) Strand=Plus/Minus Query 131602 GGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAA 131661 ||| || ||| || ||||| |||| |||| | |||| ||||| ||||||||||| Sbjct 2278586 GGGGCACTCGTGCGGGCACATGAGCGTCCACTCTTCGTTGGCCTCAACGCGCTTCATAAA 2278527 Query 131662 CAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCAT 131721 || || |||||||| | |||| | || || || | || | ||| || ||| | Sbjct 2278526 CAGGTCGGGCACCCACAGCGCGAAGAAGAGGTCGCGGGCACGCTGCTCCTCAACACCGGT 2278467 Query 131722 AAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 | || |||| | | |||||| || ||||| || ||||| || || | ||||| || Sbjct 2278466 GTTCTTCTTCAGCTCGAGAAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTACACGGC 2278407 Query 131782 CATTGCGCCTTTGCGC---TTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATAC 131838 | ||||| ||| || ||||| || | || | || || |||||||| | || Sbjct 2278406 AAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACAC 2278347 Query 131839 GCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATT 131898 ||||| ||||||| | | ||||| | || || ||||||| |||||| ||| | Sbjct 2278346 GCGCAGCATGGGCACGAGCCCGTTCGAGTGGCCGTTGGTGCCGGCAATGTACGAGCCGCT 2278287 Query 131899 GGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCA 131958 ||| | ||| ||||| ||| | || ||||| || ||| | || ||||| | || || Sbjct 2278286 GGCGCGGATGTTGTGCACGCTAAGGCCAATGCCGCCGGCTGTCTTGGAGATCATGGCACA 2278227 Query 131959 TTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTC 131994 | | || || | ||||| || || | |||||| Sbjct 2278226 CGTCTTGAGCGTATCGTAGATGCCCTCGATGCTGTC 2278191 >seq10 Length=1852485 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 ||||| ||||||| |||| || | || | ||| || || || || ||||||||| Sbjct 1590330 TTGCCACCGCGCAGGCGCAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCG 1590389 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 |||| |||| |||| || ||||| || || || | ||||| ||||| || || ||| Sbjct 1590390 CTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGC 1590449 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTC 27196 || | ||||| || || |||||| || | | | || | | ||| | |||| || Sbjct 1590450 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGC-TC 1590508 Query 27197 AACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || || | ||||| ||||| || ||||||||||| ||||| Sbjct 1590509 AACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1590559 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||||| || | || | || | ||| || || || || |||||||||| Sbjct 1590787 TGCCACCGCGCAGGCGAAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGC 1590846 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| |||| |||| || ||||| || ||||| | || || ||||| || || |||| Sbjct 1590847 TCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATAAGCCGCTGCTGGTCAGGCG 1590906 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | ||||| || || |||||| || | | | || | | ||| | |||| ||| Sbjct 1590907 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGC-TCA 1590965 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 || || || || || | ||||| ||||| || ||||||||||| ||||| | ||| Sbjct 1590966 ACCTCAAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATGGTTGC 1591021 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||||| || | || | || | ||| || || || || |||||||||| Sbjct 1590559 TGCCACCGCGCAGGCGAAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGC 1590618 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| |||| |||| || ||||| || || || | ||||| ||||| || || |||| Sbjct 1590619 TCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCG 1590678 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | ||||| || || |||||| || | | | || | | ||| | |||| ||| Sbjct 1590679 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGC-TCA 1590737 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || | ||||| ||||| || ||||||||||| ||||| Sbjct 1590738 ACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1590787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933602451248