Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq4 114 4e-20 seq8 93.3 1e-13 >seq4 Length=2372320 Score = 114 bits (126), Expect = 4e-20 Identities = 324/487 (67%), Gaps = 18/487 (4%) Strand=Plus/Plus Query 254809 CAGCTGCTACCTACTGACCATCAGTGAAGACAGTATCCAAGGCATCTTCGAAACGCTATC 254868 |||||||| ||| || ||||| | || ||||| ||| | ||||||| ||| ||||| Sbjct 2278163 CAGCTGCTTCCTCCTCACCATGAAGGACGACAGCATCGAGGGCATCTACGATACGCTCAA 2278222 Query 254869 GCGATGCGCATTCGTGAGT--CAATCGAGC-GGCGGCGTGGGACTCAACATCTCCAACGT 254925 | || || | ||| ||| ||| |||||| | || || | | | |||| | Sbjct 2278223 GACGTGTGC---CATGATCTCCAAGACAGCCGGCGGCATTGGCCTTAGCGTGCACAACAT 2278279 Query 254926 GCGCGCCAGCGGCACACCGATTCGCTCGACGAACGGACG---GAGCGGCGGCATTATACC 254982 |||||||||||| | ||| | || ||||| | || ||| || | | || Sbjct 2278280 CCGCGCCAGCGGCTCGTACATTGCCGGCACCAACGGCCACTCGAACGG--GC-TCGTGCC 2278336 Query 254983 AATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGCCC 255042 ||| | || |||||||||||| ||| ||||||||||| || || ||| ||| || || Sbjct 2278337 CATGCTGCGCGTGTTCAACAACACGGCGCGCTACGTCGACCAGGGCGGCAACAAGCGGCC 2278396 Query 255043 AGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACA--TTGAACGGTTTTTACTG 255100 || || || || | ||||| |||||||||||||| |||| || || ||| | | Sbjct 2278397 CGGCGCCTTTGCCGTGTACCTCGAGCCGTGGCACGCAGACATCTTTGAC--TTTCTCGAG 2278454 Query 255101 CTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGTCT-G 255159 ||| | || ||||| ||||||| | ||||||||| ||| | ||| | | | Sbjct 2278455 CTGAAGAAGAACACCGGTGTTGAGGAGCAGCGTGCCCGCGACCTCTTCTTCGCGCTGTGG 2278514 Query 255160 GTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCCTCATGTGTCC 255219 |||| ||| ||||||||| ||||| || |||| |||| |||||||| || Sbjct 2278515 GTGC-CCGACCTGTTTATGAAGCGCGTTGAGGCCAACGAAGAGTGGACGCTCATGTGCCC 2278573 Query 255220 CAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTATCTGGA 255279 || | |||||||| ||| | | || ||||||||||| ||||| | | Sbjct 2278574 GCACGAGTGCCCCGGTCTCTCGGACACATACGGCGACGAGTTTGAGCGCCTGTACGAGAA 2278633 Query 255280 GTACGAG 255286 ||||||| Sbjct 2278634 GTACGAG 2278640 Score = 86.0 bits (94), Expect = 2e-11 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 256131 AGGAGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTC 256190 || || |||| | |||||||||| | | ||||||||||| ||||| ||| || | Sbjct 2279688 AGAAGGACGGCATTCGCAACTCGCTGCTGGTTGCGCCCATGCCCACCGCGTCCACTGCCC 2279747 Query 256191 AAATCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCG 256250 | || || || ||| || || || ||| || | |||| ||| ||||||||||| Sbjct 2279748 AGATTCTCGGCAACAACGAGTCGATTGAGCCCTACACGAGCAACATCTACTCGCGCCGCG 2279807 Query 256251 TTCGCTCCGGCGAGTTCGCCGTGGTGAACCAGTACTTGGTGGACGA-CTTGGTACGACTC 256309 | | ||| ||||||||| ||||||||| || ||||| | | || |||| | || | Sbjct 2279808 TGCTCTCTGGCGAGTTCCAGGTGGTGAACAAGCACTTGCTCAAGGACCTTGTTGAGA-TG 2279866 Query 256310 GGTCTGTGG 256318 ||||||||| Sbjct 2279867 GGTCTGTGG 2279875 >seq8 Length=1951132 Score = 93.3 bits (102), Expect = 1e-13 Identities = 119/161 (74%), Gaps = 5/161 (3%) Strand=Plus/Plus Query 443706 GAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTC 443765 ||||| | ||||| ||||| | ||||| || | || || ||||| | || ||| | Sbjct 1783552 GAGCGCGTCGTCGCCTTTGCCGCTGTCGAGGGCATCTTCTTCAGCGGGT-CGTTCGCCGC 1783610 Query 443766 CATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGT--AACGAACTG 443823 |||||||||| | || ||||| || || |||| ||| ||||| ||| ||||| || Sbjct 1783611 CATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGAC--GCAGTCCAACGAGCTC 1783668 Query 443824 ATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 ||||| || |||||||| |||| |||||||| ||||| || Sbjct 1783669 ATCAGCCGCGACGAGGGCCTGCACTGCGACTTTGCCTGCCT 1783709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588332866014530