Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 147 3e-30 >seq4 Length=2372320 Score = 147 bits (162), Expect = 3e-30 Identities = 453/690 (66%), Gaps = 23/690 (3%) Strand=Plus/Minus Query 111343 CTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTT 111402 ||||||||||||||| ||||||||||||||||| || || |||||||||||||| | | Sbjct 2278757 CTTCTTGTTGCACGCGTCCTTGTAGAGCATGTATGGGGTGCCCGTCTCCGTCTGGGCGTC 2278698 Query 111403 GAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGT-CCCTCCGCCT 111461 |||||| || ||| | | || || | || | | ||||| | ||||| |||| Sbjct 2278697 GAGAATGGCAAACCAGAGCTTGGATGCCGACACCTTCTTG-CGGCCCTTGCCCTCGGCCT 2278639 Query 111462 CGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCT 111521 ||||||| ||| ||| |||||||| || || | ||| |||||||| || || Sbjct 2278638 CGTACTTCTCGTACAGGCGCTCAAACTCGTCGCCGTATGTGTCCGAGAGACCGGGGCACT 2278579 Query 111522 TGTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTCAACCCGCTTCATGAAAAGGTC 111579 || || || | || | ||| | | | || ||||||| |||||||| || ||||| Sbjct 2278578 CGTGCGGGCACATGAGCGTCCACT--CTTCGTTGGCCTCAACGCGCTTCATAAACAGGTC 2278521 Query 111580 TGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAG 111639 || | |||||| | | ||||| || | || ||| || |||| ||| Sbjct 2278520 GGGCACCCACAGCGCGAAGAAGAGGTCGCGGGCACGCTGCTCCTCAACACCGGTGTT-CT 2278462 Query 111640 TCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 111698 || | | ||| || || || | ||| || |||||||| ||||| || || || || | | Sbjct 2278461 TCTTCAGCTCGAGAAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTACACGGCAAAGG 2278402 Query 111699 ATCC------CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACG 111751 || ||| | | ||||| || | || |||||||| ||| ||| || ||| Sbjct 2278401 CGCCGGGCCGCTTGTTGCCGCCC----TGGTCGACGTAGCGCGCCGTGTTGTTGAACACG 2278346 Query 111752 CGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTAT 111809 || ||||| || | | || | || || || || || || || |||||| Sbjct 2278345 CGCAGCATGGGCACGAGCCCGTTCGAGTGGCCGTTGGTGCCGGCAATGTACGAG--CCGC 2278288 Query 111810 TGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCAC 111869 |||| | | | || | | | ||||| || || || ||| ||||| |||| Sbjct 2278287 TGGCGCGGATGTTGTGCACGCTAAGGCCAATGCCGCCGGCTGTCTTGGAGATCATGGCAC 2278228 Query 111870 ACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGC 111929 || | | || || | ||||| || | ||| ||| ||||| ||| || ||||||| Sbjct 2278227 ACGTCTTGAGCGTATCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGGAGGAAGC 2278168 Query 111930 AACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGA 111989 | ||| || |||||| | || || |||| ||||| || ||||| | ||||| ||| Sbjct 2278167 AGCTGCTCAGCTGCGGGATGGGCGTGCCAGAGTTGAACAGCGTTGGCGACGCGTGCGTGA 2278108 Query 111990 ACATACCTTGGGACATCTTGTCGTATGTCT 112019 | | || | |||||| | || ||| |||| Sbjct 2278107 AAAAGCCCTCGGACATGTAGTTGTACGTCT 2278078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030791038400