Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4 159 4e-34 seq10 131 2e-25 >seq4 Length=2372320 Score = 159 bits (176), Expect = 4e-34 Identities = 448/682 (66%), Gaps = 17/682 (2%) Strand=Plus/Minus Query 118822 TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA 118881 |||| ||||| |||||||| ||||||||||| || ||||||||||| |||| | ||||| Sbjct 2278752 TGTTGCACGCGTCCTTGTAGAGCATGTATGGGGTGCCCGTCTCCGTCTGGGCGTCGAGAA 2278693 Query 118882 TAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACT 118941 | || ||||| | || || | ||| | | | | ||||| ||||||||| Sbjct 2278692 TGGCAAACCAGAGCTTGGATGCCGACACCTTCTTGCGGCCCTTGCCCTCGGCCTCGTACT 2278633 Query 118942 TTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTG 119001 | ||| ||| |||||||| || || | || ||||| || || || | | Sbjct 2278632 TCTCGTACAGGCGCTCAAACTCGTCGCCGTATGTGTCCGAGAGACCGGGGCACTCGTGCG 2278573 Query 119002 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 119061 |||| | ||| | ||| | | ||||||| |||||||| || ||||| || | || Sbjct 2278572 GGCACATGAGCGTCCACTCTTCGTTGGCCTCAACGCGCTTCATAAACAGGTCGGGCACCC 2278513 Query 119062 AGAGCGCCGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAA 119119 | ||||| ||||||| || || || ||| || ||| | || || || Sbjct 2278512 ACAGCGCGAAGAAGAGGTCGCG--GGCACGCTGCTCCTCAACACCGGTGTTCTTCTTCAG 2278455 Query 119120 CTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC------CGCGATTGA 119173 ||| | |||||| | ||| || ||||||||||| || |||||||| ||| | Sbjct 2278454 CTCGAGAAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTACACGGCAAAGGCGCCGGG 2278395 Query 119174 CCCCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCAT 119233 || ||| | | || |||||| || || | ||| ||| ||| || || || ||||| Sbjct 2278394 CCGCTT--GTTG-CCGCCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCAT 2278338 Query 119234 TGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTG 119291 || | || || | || ||||| || || || || |||||| | |||| | | Sbjct 2278337 GGGCACGAGCCCGTTCGAGTGGCCGTTGGTGCCGGCAATGTACGAGCC--GCTGGCGCGG 2278280 Query 119292 ACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTG 119351 | | ||| | | | ||||| || || || ||| ||||| || ||| | || Sbjct 2278279 ATGTTGTGCACGCTAAGGCCAATGCCGCCGGCTGTCTTGGAGATCATGGCACACGTCTTG 2278220 Query 119352 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGAC 119411 || | ||||||| || ||||| ||| |||| | | || |||||||||||| | Sbjct 2278219 AGCGTATCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGGAGGAAGCAGCTGCTC 2278160 Query 119412 ATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT 119471 | || || |||| || |||| |||||| || ||||| | |||||| |||| | || Sbjct 2278159 AGCTGCGGGATGGGCGTGCCAGAGTTGAACAGCGTTGGCGACGCGTGCGTGAAAAAGCCC 2278100 Query 119472 TGGGACATCTTGTCGTAGGTCT 119493 | |||||| | || ||| |||| Sbjct 2278099 TCGGACATGTAGTTGTACGTCT 2278078 >seq10 Length=1852485 Score = 131 bits (144), Expect = 2e-25 Identities = 297/444 (67%), Gaps = 6/444 (1%) Strand=Plus/Minus Query 178885 CCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 178944 |||||||||||||| ||| | |||||||| || ||||| || || | ||| || || Sbjct 1769506 CCCGTGCCGATGCCGTCGCTGCCGTTCACCAGCACCATGGGCAGGATGGGCGCGTAAAAC 1769447 Query 178945 TCTGGTTCAATCGCACGCCCGTCATCATCCAAATAATTGAGCACGGGGTCGTCCCTCGGA 179004 ||||| ||||||| ||||||| || |||| | ||||||| || ||||||| | Sbjct 1769446 TCTGGCTCAATCGTCTGCCCGTCGTCCTCCAGGTGGTTGAGCAGGGCGTCGTCCGCCAAG 1769387 Query 179005 TCAAAGATTTTACGAGCATCCCTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGACGCA 179064 | ||||| || || || | | ||| ||||||||||| | || | ||| Sbjct 1769386 TGGAAGATCTTGCGCGCCAGCGGCGACAGTGAGGTGAAGATGTAACGCGAGCTGGCCGCG 1769327 Query 179065 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTG 179124 || ||||| ||| || ||||| ||||| || ||| ||| || || |||| ||| Sbjct 1769326 TCCTTGCCGCCCGCCAGGCGCGTGCCAAACTGGCCAATGGGCAGCAGCAGGTTGAGGTTG 1769267 Query 179125 TTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCG 179184 || |||| | | | |||| ||||| || | || ||| | || ||| Sbjct 1769266 TTGCTGCCCACGAACCGCTGCGCCATGCCCACAATGGTGCCGGCCAGGCTCATCTCGCCG 1769207 Query 179185 TGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTCATCC 179244 || ||||| ||||| | |||| || || | || | |||||||||||| ||||| ||| Sbjct 1769206 TGGTGGTAGGCCGAGTGCTCCGAGACGTACCCGGCAAGCTGCGCCACCTTGATCTCGTCC 1769147 Query 179245 TTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGGCCGTCG 179304 ||||| || | |||||| | | | |||||| | || |||||||| |||| Sbjct 1769146 TTGAGCTTGCGCTTGAAGCAGGAGAAGAGCACCTTGCGCTGGCCCGGCTTGAGCCCGT-- 1769089 Query 179305 GCCATG-TGC--GCGATGGAACGC 179325 ||||| ||| | |||||| ||| Sbjct 1769088 -CCATGATGCTGGGGATGGACCGC 1769066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434009512240