Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4 127 2e-24 seq10 109 6e-19 seq8 96.9 4e-15 >seq4 Length=2372320 Score = 127 bits (140), Expect = 2e-24 Identities = 444/687 (65%), Gaps = 17/687 (2%) Strand=Plus/Plus Query 104286 AGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATG 104345 |||| ||| || | |||||| | || | |||| ||||| | ||||| || ||||| Sbjct 2278078 AGACGTACAACTACATGTCCGAGGGCTTTTTCACGCACGCGTCGCCAACGCTGTTCAACT 2278137 Query 104346 CTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAA 104405 |||| || || | || || || ||| |||||||| || ||| ||||| ||| | Sbjct 2278138 CTGGCACGCCCATCCCGCAGCTGAGCAGCTGCTTCCTCCTCACCATGAAGGACGACAGCA 2278197 Query 104406 TCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTA 104465 || | || ||||| | || || | | |||||| ||||| ||| || || || | Sbjct 2278198 TCGAGGGCATCTACGATACGCTCAAGACGTGTGCCATGATCTCCAAGACAGCCGGCGGCA 2278257 Query 104466 TTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGACAAATGG 104523 |||| | | | || | | | |||| |||||| || || || || || Sbjct 2278258 TTGGCCTTAGCGTGCACAACATCCGCGCCAGCGG--CTCGTACATTGCCGGCACCAACGG 2278315 Query 104524 TCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAA 104583 || || | || | | || ||||| ||||| || ||| ||| |||||||| || | Sbjct 2278316 CCACTCGAACGGGCTCGTGCCCATGCTGCGCGTGTTCAACAACACGGCGCGCTACGTCGA 2278375 Query 104584 TCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 || ||||| | | ||| || | | || || || || ||||| ||||||| Sbjct 2278376 CCA----GGGCGGCAACAAGCGGCCCGGCGCCTTTGCCGTGTACCTCGAGCCGTGGCACG 2278431 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC 104696 | || ||| | || || || ||| || ||| |||| |||||| ||| || Sbjct 2278432 CAGACATCTTTGACTTTCTCGAGCTGAAGAAGAACACCGGTGTTGAGGAGCAGCGTGCCC 2278491 Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 104756 |||| ||||||| ||| || ||| | || || || || |||||| | ||||||| | | Sbjct 2278492 GCGACCTCTTCTTCGCGCTGTGGGTGCCCGACCTGTTTATGAAGCGCGTTGAGGCCAACG 2278551 Query 104757 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGG 104816 | ||| | ||| | || || || || || |||||||| || | || || | Sbjct 2278552 AAGAGTGGACGCTCATGTGCCCGCACGAGTGCCCCGGTCTCTCGGACACATACGGCGACG 2278611 Query 104817 AGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC-GGGCGACTGCGACGGTGCCA 104875 ||||||| ||| ||| |||||||||| || || |||| | || |||| | Sbjct 2278612 AGTTTGAGCGCCTGTACGAGAAGTACGAGGCCGAGGGCAAGGGCCGCAA-GAAGGTGTCG 2278670 Query 104876 GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATG 104935 || || | | ||| || |||||| | | || || ||||| || || ||||||||| Sbjct 2278671 GCATCCAAGCTCTGGTTTGCCATTCTCGACGCCCAGACGGAGACGGGCACCCCATACATG 2278730 Query 104936 CTTTACAAAGACGCCTGTAACCAAAAG 104962 || ||||| ||||| || ||| | ||| Sbjct 2278731 CTCTACAAGGACGCGTGCAACAAGAAG 2278757 >seq10 Length=1852485 Score = 109 bits (120), Expect = 6e-19 Identities = 261/387 (67%), Gaps = 6/387 (2%) Strand=Plus/Minus Query 169139 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 169198 |||||||||| ||| || | |||| | ||| |||||||||||||| ||||| | ||| Sbjct 1768110 GGCCAGAAGTGGTGGATGAAGTTGATGAGGAGGCCCTTGATGTGGGAGCCGTCCTGATCC 1768051 Query 169199 GCATCCGTCATGATCATGAGACGACCATACCGAAGCT-CGGAAACATCTTGATAGTCCTT 169257 ||| |||||||||||||| || || || || |||| | | || || || || | Sbjct 1768050 TGATCGGTCATGATCATGAGCCGCCCGTATCGGAGCTGCTTCGTCGTCGTG-TACTCGTG 1767992 Query 169258 ACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTG 169317 || | || |||| |||||| | | || | ||| ||| | | ||| Sbjct 1767991 CCCAAACTTGAGGCCCATGATCTTGGCAATGTTCTTCACCTCCGCGTTGTCCATAATCTG 1767932 Query 169318 TGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTG 169377 || || || ||||| || || ||| || || || |||||||| ||||||| Sbjct 1767931 CTTGTGCGACGCCTCGCGCACGTTAAGCAGCTTGCCGCGGAGCGGGAAGACGCCGTAGTA 1767872 Query 169378 ATCACGACCAACGACGGAGAGACCCGCG-ACTGCGAGAGTCTTCGCCGAGTCACCCTCGG 169436 || || |||| ||| || ||||| || || || | ||| || ||||||||||||| Sbjct 1767871 GTCGCGCCCAAGCACGCCCAG-CCCGCTCACCGCCAGCGCCTTGGCGGAGTCACCCTCGG 1767813 Query 169437 TGACGATGAGCGTACATTTTCCAGA-TTGTGCCGTACCCGCCTTGTTCGCATCATCCAAT 169495 | | ||||||||| || ||| || ||| ||| || |||| ||| || || |||| Sbjct 1767812 TCAGGATGAGCGTGCACTTTGACGAGTTGCGCC-CGCCGGCCTCGTTGGCGTCGTCCAGC 1767754 Query 169496 TTGGGAATACCAGTAATTTTGGACTTT 169522 ||||| || || | || ||| ||||| Sbjct 1767753 TTGGGGATGCCGGAGATCTTGCACTTT 1767727 >seq8 Length=1951132 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 |||||||| ||||| || |||| ||||| ||| ||||| ||||||||| || || Sbjct 1783543 TCCTTTGCGGAGCGCGTCGTCGCCTTTGCCGCTGTCGAGGGCATCTTCTTCAGCGGGTCG 1783602 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 ||| ||| || | |||||||||||||| || |||||||| || || |||||| Sbjct 1783603 TTCGCCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGACGCAGTCCAAC 1783662 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| ||| || |||||||| || ||| || ||||| Sbjct 1783663 GAGCTCATCAGCCGCGACGAGGGCCTGCACTGCGACTTTGC 1783703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259677222960