Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq10 138 3e-27 seq4 102 2e-16 seq40 91.5 4e-13 seq22 91.5 4e-13 >seq10 Length=1852485 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | | || ||||| ||||| || ||| || || || || || || Sbjct 1590557 CATGCCACCGCGCAGGCGAAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTC 1590616 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || || ||||| || || ||||||||||| || || ||||| ||||| Sbjct 1590617 GCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGG 1590676 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || || || |||||||| |||||||| || Sbjct 1590677 CGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTC 1590736 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| |||||||| | ||||| || || || || || ||||| |||||||| Sbjct 1590737 AACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1590787 Score = 134 bits (148), Expect = 4e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| ||||| || ||| || || || || || || | || || || || Sbjct 1590348 AGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 1590407 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| || || ||||||||||| || || ||||| ||||| || || || || || ||| Sbjct 1590408 TCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 1590467 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || |||||||| |||||||| ||||| |||||||| | ||| Sbjct 1590468 TGGATCTTCGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAACCTCAAGTGTGATGGTC 1590527 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 1590528 TTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1590559 >seq4 Length=2372320 Score = 102 bits (112), Expect = 2e-16 Identities = 274/415 (66%), Gaps = 3/415 (1%) Strand=Plus/Minus Query 349519 AAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGC 349578 ||| || || || ||||| || || || || ||||| | || ||||||||||| ||||| Sbjct 1370163 AAAGCAGTTCTTCCCCGAGGAGATCTCCTCCATGGTCCTCGTCAAAATGAAGGAGATTGC 1370104 Query 349579 TGAAGCATATTTAGG-TGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTA 349637 ||||| || | || | ||| | | || | || |||| || || ||||| || | Sbjct 1370103 AGAAGCCTACCTCGGCTCCGACA-TCAAGGACGTCGTCGTTACCGTCCCCGCCTACTTCA 1370045 Query 349638 ATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAA 349697 | || ||||||| || || || || || |||| |||||| || | || || || Sbjct 1370044 ACGACTCCCAGCGCCAGGCCACCAAGGACGCAGGCACCATTGCCGGCCTCAACGTCCTCC 1369985 Query 349698 GAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACC 349757 | || || || || ||||| || || || || || || || || || || | | | | Sbjct 1369984 GCATCATCAACGAGCCCACGGCCGCCGCCATCGCCTACGGTCTCGACAAGAAGGGCCAGA 1369925 Query 349758 AAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAA 349817 | || | | || || || ||| | ||||| || || || ||||| || | || Sbjct 1369924 AGGAGGCCCACGTCCTCATCTTCGATCTCGGTGGCGGCACCTTCGATGTGTCCGTCCTGT 1369865 Query 349818 CACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAG 349877 | | || || || || || || || || | ||||| ||||| || || ||||| || | Sbjct 1369864 CCATCGACGACGGCATCTTCGAGGTCAAGTCCACTGCCGGTGACACCCACCTTGGCGGCG 1369805 Query 349878 AAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC 349932 | || ||||| || || | || || ||||| | || || ||||| ||||| Sbjct 1369804 AGGACTTTGACAACCGCATGGTCAACCACTTTGTGACCGAGTTCAAGCG-CAAGC 1369751 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||| ||||| |||| ||||||| ||||||||| |||||||||||||||||||||| | | Sbjct 452640 GGGGCTGTAGCTCAAGTGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACCGGGATCGATA 452581 Query 235950 CCCAGCATCTCCA 235962 ||| ||| ||||| Sbjct 452580 CCCGGCAGCTCCA 452568 >seq40 Length=447072 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||| ||||| |||| ||||||| ||||||||| |||||||||||||||||||||| | | Sbjct 44457 GGGGCTGTAGCTCAAGTGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACCGGGATCGATA 44398 Query 235950 CCCAGCATCTCCA 235962 ||| ||| ||||| Sbjct 44397 CCCGGCAGCTCCA 44385 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||| ||||| |||| ||||||| ||||||||| |||||||||||||||||||||| | | Sbjct 134818 GGGGCTGTAGCTCAAGTGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACCGGGATCGATA 134877 Query 235950 CCCAGCATCTCCA 235962 ||| ||| ||||| Sbjct 134878 CCCGGCAGCTCCA 134890 >seq22 Length=1285527 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||| ||||| |||| ||||||| ||||||||| |||||||||||||||||||||| | | Sbjct 101206 GGGGCTGTAGCTCAAGTGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACCGGGATCGATA 101147 Query 235950 CCCAGCATCTCCA 235962 ||| ||| ||||| Sbjct 101146 CCCGGCAGCTCCA 101134 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||| ||||| |||| ||||||| ||||||||| |||||||||||||||||||||| | | Sbjct 107024 GGGGCTGTAGCTCAAGTGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACCGGGATCGATA 107083 Query 235950 CCCAGCATCTCCA 235962 ||| ||| ||||| Sbjct 107084 CCCGGCAGCTCCA 107096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515251410213662