Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4 297 2e-75 seq8 181 1e-40 >seq4 Length=2372320 Score = 297 bits (328), Expect = 2e-75 Identities = 466/659 (71%), Gaps = 10/659 (2%) Strand=Plus/Minus Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTT 79217 ||||| ||| || |||||||||||| |||||| || || || ||||| ||| | Sbjct 2278757 CTTCTTGTTGCACGCGTCCTTGTAGAGCATGTATGGGGTGCCCGTCTCCGTCTGGGCGTC 2278698 Query 79218 GAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGA---CCCTGTGC 79274 ||||| | | ||||| | ||| |||| |||||||| | |||| || Sbjct 2278697 GAGAATGGCAAACCAGAGCTTGGATGCC--GACA-CCTTCTTGCGGCCCTTGCCCTCGGC 2278641 Query 79275 GACGTACGTCCGGTACAACTCGTTGAAAGCC-TCCCCATAGACATCGGGCAGGCCCGGGC 79333 ||||| || ||||| || | ||| | || || || || | || || |||| Sbjct 2278640 CTCGTACTTCTCGTACAGG-CGCTCAAACTCGTCGCCGTATGTGTCCGAGAGACCGGGGC 2278582 Query 79334 ACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGT 79393 |||||||||||||||| || ||| || |||| |||||| || ||| || |||| Sbjct 2278581 ACTCGTGCGGGCACATGAGCGTCCACTCTTCGTTGGCCTCAACGCGCTTCATAAACAGGT 2278522 Query 79394 CCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCA 79453 | || | |||||| || ||||||||||||| |||| |||||| | || |||| Sbjct 2278521 CGGGCACCCACAGCGCGAAGAAGAGGTCGCGGGCACGCTGCTCCTCAACACCGGTGTTCT 2278462 Query 79454 GACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACG 79513 ||||||||||||||| | |||||| |||||||||||||| || || | ||| || | Sbjct 2278461 TCTTCAGCTCGAGAAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTACACGGCAAAGG 2278402 Query 79514 AACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGA 79573 || |||||| ||||||||||| |||||| || |||||||||||||| || || | Sbjct 2278401 CGCCGGGCCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCA 2278342 Query 79574 GCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCC 79633 |||||||||||| |||| | | |||||| || ||| || | ||||| || | Sbjct 2278341 GCATGGGCACGAGCCCGTTCGAGTGGCCGTTGGTGCCGGCAATGTACGAGCCGCTGGCGC 2278282 Query 79634 GAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCC 79692 | ||||| | ||| | | || ||||| |||| ||||||||| || ||| | Sbjct 2278281 GGATGTT-GTGCACGCTAAGGCCAATGCCGCCGGCTGTCTTGGAGATCATGGCACACGTC 2278223 Query 79693 TTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTC 79752 |||||||| ||||||||||||||||| |||||||||||| | || ||||||||||| Sbjct 2278222 TTGAGCGTATCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGGAGGAAGCAGCTG 2278163 Query 79753 GACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAA 79811 || ||| ||| || ||| || | |||||| || || |||| |||||||||||| || Sbjct 2278162 CTCAGCTGCGGGATGGGCGTGCCAGAGTTGAACAGCGTTGGCGACGCGTGCGTGAAAAA 2278104 Score = 246 bits (272), Expect = 3e-60 Identities = 451/651 (69%), Gaps = 20/651 (3%) Strand=Plus/Plus Query 19193 TTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCG 19252 || |||||||||||| |||| || || |||||| | || ||| || ||||||| || Sbjct 2278104 TTTTTCACGCACGCGTCGCCAACGCTGTTCAACTCTGGCACGCCCATCCCGCAGCTGAGC 2278163 Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||| ||||| | | |||||||| |||||||| |||||||||||||| ||||||||| Sbjct 2278164 AGCTGCTTCCTCCTCACCATGAAGGACGACAGCATCGAGGGCATCTACGATACGCTCAAG 2278223 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCG 19371 ||| || ||||||||| |||| || || || | | ||| | || ||||| Sbjct 2278224 ACGTGTGCCATGATCTCCAAGACAGCCGGCGGCATTGGCCTTAGCGTGCAC-AACATCCG 2278282 Query 19372 GTCGAGTGGTACACGAATCAATG---GGACGAACGGAGTAGCCGACGGTATCGTCCCAAT 19428 | || || | || | || || | || ||||| | |||| |||| || || Sbjct 2278283 CGCCAGCGG--CTCGTA-CATTGCCGGCACCAACGGCCACTCGAACGGGCTCGTGCCCAT 2278339 Query 19429 GCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGG 19488 ||| ||||| |||||||||||||| | |||||| ||||||| ||| ||| || || Sbjct 2278340 GCTGCGCGTGTTCAACAACACGGCGCGCTACGTCGACCAGGGCGGCAACAAGCGGCCCGG 2278399 Query 19489 CTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCG 19548 | | || ||| | ||||||||||| |||||||| ||| || | || || ||||| ||| Sbjct 2278400 CGCCTTTGCCGTGTACCTCGAGCCGTGGCACGCAGACATCTTTGACTTTCTCGAGCTGAA 2278459 Query 19549 CCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCC 19608 |||| |||| |||||| ||| |||||||||||| || ||||| | || Sbjct 2278460 GAAGAACACCGGTGTTGAGGAGCAGCGTGCCCGCGACCTCTTCTTCGCGCTGTGGGTGCC 2278519 Query 19609 GGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGA 19668 ||||| || ||| || |||||| ||||||| ||| || |||||||||||||| Sbjct 2278520 CGACCTGTTTATGAAGCGCGTTGAGGCCAACGAAGAGTGGACGCTCATGTGCCCGCACGA 2278579 Query 19669 ATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAG---TTGTACCGGACTTA 19725 ||||| || || | ||| |||||||| | ||| |||| ||||| || || Sbjct 2278580 GTGCCCCGGTCTCTCGGACACATACGGCGACGAGTT---TGAGCGCCTGTACGAGAAGTA 2278636 Query 19726 CGTAGCCCAGGGC---CGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTCTGGGACCGCGT 19782 || ||| ||||| | ||||||||| ||| ||| | ||||| | | Sbjct 2278637 CGAGGCCGAGGGCAAGGGCCGCAAGAAGGT-GTC--GGCATCCAAGCTCTGGTTTGCCAT 2278693 Query 19783 CCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGC 19833 ||| | |||| ||||| ||||| || |||||| |||||||||||| Sbjct 2278694 TCTCGACGCCCAGACGGAGACGGGCACCCCATACATGCTCTACAAGGACGC 2278744 Score = 183 bits (202), Expect = 3e-41 Identities = 390/571 (68%), Gaps = 30/571 (5%) Strand=Plus/Plus Query 19998 TGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTT 20057 || ||||||| ||| ||| ||||||| || || || | ||||| |||| | Sbjct 2279319 TGCACGAGGTTACCAAGGTGCTCACGCGCAACCTCAACAAGATTATCGACATCAACTACT 2279378 Query 20058 ACCC-GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTC 20116 |||| | || || |||||||||||| || ||||||||||| || || | || ||||| Sbjct 2279379 ACCCTGTCCCAGA-GGCGCGCAAGTCCAACATGCGCCACCGCCCCATTGGCATTGGCGTG 2279437 Query 20117 CAGGGCCTGGCCGACG---TTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCG 20173 |||||||| ||||||| || || |||||| | || | || ||| | |||| Sbjct 2279438 CAGGGCCTTGCCGACGCGTTTATCCTGATGC---GTCTTCCCTTTGACAGCGACGAGGCA 2279494 Query 20174 CGCGAGCTCAAC---AAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCG 20230 |||||| | ||| ||| || |||||| || | ||||||| |||||| ||| | Sbjct 2279495 CGCGAGGTGAACCGCAAG---ATTTTCGAGACCATCTACCACGGCGCCCTC---GAAGCC 2279548 Query 20231 TGC---GAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCC 20287 | | || | || | || || || |||||||| || |||| |||||| | || Sbjct 2279549 TCCACGGAGATTGCGTCCGTTGAGGGGCCATACGAGACTTTTGAGGGCTCGCCCACCTCT 2279608 Query 20288 GAGGGTATCCTCCAGCCGGACATGTGGGGCGT------CACTGAGAA-TGAGTTTTGGAG 20340 ||||| || || ||| |||||||||| || ||| || || | || |||| Sbjct 2279609 GAGGGCATTCTTCAGTTTGACATGTGGGATGTGAAGCCCACGGACCTGTGGGATTGGGAG 2279668 Query 20341 CGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCAT 20400 | || | | | | |||| |||| ||||||||||| |||| || |||||||| Sbjct 2279669 TCGCTTCGCGAGCGCG-TGAAGAAGGACGGCATTCGCAACTCGCTGCTGGTTGCGCCCAT 2279727 Query 20401 GCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGAC 20460 ||| ||||| || || |||||||| | || ||||||||| | | ||||| ||||||| Sbjct 2279728 GCCCACCGCGTCCACTGCCCAGATTCTCGGCAACAACGAGTCGATTGAGCCCTACACGAG 2279787 Query 20461 CAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGT 20520 ||||||||||| ||| || || | || |||||| |||| ||||||||| || | Sbjct 2279788 CAACATCTACTCGCGCCGCGTGCTCTCTGGCGAGTTCCAGGTGGTGAACAAGCACTTGCT 2279847 Query 20521 CCGCGA-CTTGCAGAAGATCGATATGTGGTC 20550 | || |||| | |||| | | ||||||| Sbjct 2279848 CAAGGACCTTGTTG-AGATGGGTCTGTGGTC 2279877 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 20616 ACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGG 20675 || |||||| | | |||| ||| || ||||| || | ||| | | || ||||||| Sbjct 2280207 ACATCAAGGCCCTGTACAAGACGGTGTGGGAGCTCTCCCAGCGTACGCTGATTGACATGG 2280266 Query 20676 CGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATC 20735 | || ||||||||||||| ||||||||| ||||||| |||| || ||| | | Sbjct 2280267 CTGCTGATCGCGGCGCCTTTATCGACCAGAGCCAGTCGTTCAACGTGCACATCTCCGACC 2280326 Query 20736 CGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGG 20795 | | | | | ||||| | |||||||| | |||| ||| | ||| || ||||||| Sbjct 2280327 CCAACTTTGGCAAGCTCACGTCCATGCACTTTTACGCGTGGAAGCGGGGCCTTAAGACGG 2280386 Query 20796 GCATGTACTATCTGCG 20811 |||||||||| ||||| Sbjct 2280387 GCATGTACTACCTGCG 2280402 Score = 82.4 bits (90), Expect = 8e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 78193 CGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGAC 78252 |||| ||||||||||||||||| || ||| |||||| |||| | |||||| || Sbjct 2280402 CGCAGGTAGTACATGCCCGTCTTAAGGCCCCGCTTCCACGCGTAAAAGTGCATGGACGTG 2280343 Query 78253 AGCTTGGCCAGACTCGGGTTC-TCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTA 78311 ||||| |||| | | ||| || ||| | ||||| ||||||| ||||||||| | Sbjct 2280342 AGCTT-GCCAAAGTTGGGGTCGGAGATGTGCACGTTGAACGACTGGCTCTGGTCGATAAA 2280284 Query 78312 CGCACCGCGGTCGGCCGCCATGTCGAT 78338 || ||||| || || |||||||| || Sbjct 2280283 GGCGCCGCGATCAGCAGCCATGTCAAT 2280257 >seq8 Length=1951132 Score = 181 bits (200), Expect = 1e-40 Identities = 367/541 (68%), Gaps = 9/541 (2%) Strand=Plus/Plus Query 59584 TGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCG 59643 ||||| || |||| ||||| || ||| || |||||| ||| |||||| ||||||| Sbjct 1783154 TGTGGTCCATGTACAAGAAGGCCGTCGCCTCCTTCTGGACCGCGGAGGAGGTTGACCTGT 1783213 Query 59644 CCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGG 59703 | | ||||| | | ||| | ||||| || |||||||| || |||||| | Sbjct 1783214 CGCGCGACCTCGACCACTGGCGCGGCCTCAAGGACACGGAGCAGCACTTTATCAAGCACG 1783273 Query 59704 TCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTT 59763 |||| ||||||||||| || || || || ||||||| || || | | | | ||| Sbjct 1783274 TCCTCGCCTTCTTCGCCGCCAGCGACGGCATTGTGAACGAGAACCTCGTCGAGCGCTT-- 1783331 Query 59764 CCAAG---GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACG 59820 || | || || ||| | | ||||| || | ||||||| | ||| | | | Sbjct 1783332 -CATGTGCGAGGTGCAGCTGCCAGAGGCGCGCTGCTTCTACGGCTTCCAGATTATGATTG 1783390 Query 59821 AGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAG 59880 || |||||||| |||| ||||||||| | ||||| | || |||| || ||| | | Sbjct 1783391 AGAACATCCACTCTGAGATGTACTCGCTGCTCATCGACACGTACATCAACGACCCGCAGG 1783450 Query 59881 AGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAAT 59940 ||||| || ||| ||| | |||||| ||||| || || | || || || | Sbjct 1783451 AGAAGCACATGCTCTTCAACGCCGTTGAGACGCTGCCCGCCGTCAAGCGCAAGGCCGAGT 1783510 Query 59941 GGGCCATGCAGTGGAT-GAGTCCTGGAG--CATCATTTGCACAACGTCTCATAGCTTTTG 59997 ||||||||| ||||| || | | | | || ||||| | || || | || |||| Sbjct 1783511 GGGCCATGCGCTGGATCGACCACAAGCGGGCCTCCTTTGCGGAGCGCGTCGTCGCCTTTG 1783570 Query 59998 CATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGC 60057 | || || || ||||||||| || |||||| || || ||||||||||| |||| Sbjct 1783571 CCGCTGTCGAGGGCATCTTCTTCAGCGGGTCGTTCGCCGCCATCTTCTGGCTCAAGAAGC 1783630 Query 60058 GTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCC 60117 | ||||||||||| ||||||| ||||||||||| || ||| ||||||||||| | Sbjct 1783631 GCGGCCTCATGCCCGGCCTGACGCAGTCCAACGAGCTCATCAGCCGCGACGAGGGCCTGC 1783690 Query 60118 A 60118 | Sbjct 1783691 A 1783691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523744089760