Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 244 1e-59 seq10 205 1e-47 seq8 141 1e-28 >seq4 Length=2372320 Score = 244 bits (270), Expect = 1e-59 Identities = 447/652 (69%), Gaps = 2/652 (0%) Strand=Plus/Plus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || |||||||| ||||||| ||||||||| |||| ||| ||| ||| || ||| Sbjct 2278107 TTCACGCACGCGTCGCCAACGCTGTTCAACTCTGGCACGCCCATCCCGCAGCTGAGCAGC 2278166 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 |||||||| | | |||||||| ||| ||||| ||||||||||| ||||||||| | Sbjct 2278167 TGCTTCCTCCTCACCATGAAGGACGACAGCATCGAGGGCATCTACGATACGCTCAAGACG 2278226 Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGC 53451 |||||| ||||||||| | || || || || | | ||| | ||| |||| || Sbjct 2278227 TGTGCCATGATCTCCAAGACAGCCGGCGGCATTGGCCTTAGCGTGCAC-AACATCCGCGC 2278285 Query 53452 GAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCG 53511 | |||| | || || || |||||| | | | || ||||||| ||||| || Sbjct 2278286 CAGCGGCTCGTACATTGCCGGCACCAACGGCCACTCGAACGGGCTCGTGCCCATGCTGCG 2278345 Query 53512 CGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTT 53571 ||| |||||||||||||| || |||||| ||||||| || ||||| || | || Sbjct 2278346 CGTGTTCAACAACACGGCGCGCTACGTCGACCAGGGCGGCAACAAGCGGCCCGGCGCCTT 2278405 Query 53572 CGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAA 53631 ||| | |||||||||||||||||||| ||||| | || |||||||||||| ||| Sbjct 2278406 TGCCGTGTACCTCGAGCCGTGGCACGCAGACATCTTTGACTTTCTCGAGCTGAAGAAGAA 2278465 Query 53632 TCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCT 53691 |||| || ||| ||| ||| ||||| || || |||||| | || ||||| Sbjct 2278466 CACCGGTGTTGAGGAGCAGCGTGCCCGCGACCTCTTCTTCGCGCTGTGGGTGCCCGACCT 2278525 Query 53692 CTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCC 53751 || ||| | || ||| |||| |||||| || ||||||||| |||||||||| Sbjct 2278526 GTTTATGAAGCGCGTTGAGGCCAACGAAGAGTGGACGCTCATGTGCCCGCACGAGTGCCC 2278585 Query 53752 CGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCA 53811 ||| ||| || ||||| || |||||| | |||| || ||||| | | Sbjct 2278586 CGGTCTCTCGGACACATACGGCGACGAGTTTGAGCGCCTGTACGAGAAGTACGAGGCCGA 2278645 Query 53812 GGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCA 53871 |||| | |||||||| ||| || | ||| ||| || ||| | ||| Sbjct 2278646 GGGCAAGGGCCGCAAGAAGGTGTCGGCATCCAAGCTCTGGTTTGCCATTCTCGACGCCCA 2278705 Query 53872 GGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAG 53923 | ||||||||| || || |||||| ||||||||| || |||| ||||| Sbjct 2278706 GACGGAGACGGGCACCCCATACATGCTCTACAAGGACGCGTGCAACAAGAAG 2278757 Score = 120 bits (132), Expect = 3e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| ||||| || ||||| ||||| |||||||| || || ||||| | Sbjct 2279696 GGCATTCGCAACTCGCTGCTGGTTGCGCCCATGCCCACCGCGTCCACTGCCCAGATTCTC 2279755 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 |||||||||||| || | ||||| ||||||| |||||||||| |||||| || | Sbjct 2279756 GGCAACAACGAGTCGATTGAGCCCTACACGAGCAACATCTACTCGCGCCGCGTGCTCTCT 2279815 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCT 55638 || ||||| || | ||||||||| | |||||||||| Sbjct 2279816 GGCGAGTTCCAGGTGGTGAACAAGCACTTGCTCAAGGACCT 2279856 Score = 100 bits (110), Expect = 3e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| | ||| ||||||||||||| | | ||| | |||||||||||| || Sbjct 2280210 TCAAGGCCCTGTACAAGACGGTGTGGGAGCTCTCCCAGCGTACGCTGATTGACATGGCTG 2280269 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGA-GAATCCT 55846 ||||||| || || | ||||||||| |||||| | ||| | ||| || || Sbjct 2280270 CTGATCGCGGCGCCTTTATCGACCAGAGCCAGTCGTTCAACGTGCACATCTCCGACCCCA 2280329 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 | |||| ||| | | || ||||||||||||| ||||||| ||| || |||||||| Sbjct 2280330 ACTTTGGC-AAGCTCACGTCCATGCACTTTTACGCGTGGAAGCGGGGCCTTAAGACGGGC 2280388 Query 55907 ATGTACTATCTGCG 55920 |||||||| ||||| Sbjct 2280389 ATGTACTACCTGCG 2280402 >seq10 Length=1852485 Score = 205 bits (226), Expect = 1e-47 Identities = 298/421 (71%), Gaps = 0/421 (0%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || |||||||| || ||||| ||||| | ||| |||| || || ||||||||| Sbjct 1769506 CCCGTGCCGATGCCGTCGCTGCCGTTCACCAGCACCATGGGCAGGATGGGCGCGTAAAAC 1769447 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 || ||||| | | || ||||| ||| || || || | | || | ||| ||| Sbjct 1769446 TCTGGCTCAATCGTCTGCCCGTCGTCCTCCAGGTGGTTGAGCAGGGCGTCGTCCGCCAAG 1769387 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | ||| ||| || | || || || ||||||||||| || ||||||||||| Sbjct 1769386 TGGAAGATCTTGCGCGCCAGCGGCGACAGTGAGGTGAAGATGTAACGCGAGCTGGCCGCG 1769327 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 |||||||| || ||||| ||||| |||||||| ||| |||| || |||||||||||| Sbjct 1769326 TCCTTGCCGCCCGCCAGGCGCGTGCCAAACTGGCCAATGGGCAGCAGCAGGTTGAGGTTG 1769267 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 ||| ||||||||| ||| |||| |||||| ||||| ||| ||| || ||| Sbjct 1769266 TTGCTGCCCACGAACCGCTGCGCCATGCCCACAATGGTGCCGGCCAGGCTCATCTCGCCG 1769207 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTC 152235 ||||| || |||| ||||||| || ||| || || | |||||||||||| || || | Sbjct 1769206 TGGTGGTAGGCCGAGTGCTCCGAGACGTACCCGGCAAGCTGCGCCACCTTGATCTCGTCC 1769147 Query 152236 GTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCC 152295 | || || ||||| |||| | | | ||||||||||||| || || | |||||| Sbjct 1769146 TTGAGCTTGCGCTTGAAGCAGGAGAAGAGCACCTTGCGCTGGCCCGGCTTGAGCCCGTCC 1769087 Query 152296 A 152296 | Sbjct 1769086 A 1769086 Score = 154 bits (170), Expect = 2e-32 Identities = 286/420 (68%), Gaps = 0/420 (0%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || ||||| || || || |||| ||| | ||| |||| || || |||| ||| Sbjct 1769506 CCCGTGCCGATGCCGTCGCTGCCGTTCACCAGCACCATGGGCAGGATGGGCGCGTAAAAC 1769447 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || ||||| | | | | ||||||||| | || ||||||| || | ||| | Sbjct 1769446 TCTGGCTCAATCGTCTGCCCGTCGTCCTCCAGGTGGTTGAGCAGGGCGTCGTCCGCCAAG 1769387 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | ||| || || | | ||| | || ||||| |||||||| ||||| || || Sbjct 1769386 TGGAAGATCTTGCGCGCCAGCGGCGACAGTGAGGTGAAGATGTAACGCGAGCTGGCCGCG 1769327 Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 |||||||| || || || ||||| || || || ||| | ||| || ||||| |||||| Sbjct 1769326 TCCTTGCCGCCCGCCAGGCGCGTGCCAAACTGGCCAATGGGCAGCAGCAGGTTGAGGTTG 1769267 Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCA 117451 ||| |||||| || || |||| | ||||| || || |||||| ||| || Sbjct 1769266 TTGCTGCCCACGAACCGCTGCGCCATGCCCACAATGGTGCCGGCCAGGCTCATCTCGCCG 1769207 Query 117452 TGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGAC 117511 ||||| || |||| ||||||| ||||| || || ||||| |||||||| || || | Sbjct 1769206 TGGTGGTAGGCCGAGTGCTCCGAGACGTACCCGGCAAGCTGCGCCACCTTGATCTCGTCC 1769147 Query 117512 GTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 | || || ||||| ||||| | | |||||||||||| | ||||| || || ||| Sbjct 1769146 TTGAGCTTGCGCTTGAAGCAGGAGAAGAGCACCTTGCGCTGGCCCGGCTTGAGCCCGTCC 1769087 >seq8 Length=1951132 Score = 141 bits (156), Expect = 1e-28 Identities = 334/499 (67%), Gaps = 9/499 (2%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || || |||||||| | ||| |||||||| ||| || || |||||| Sbjct 1783649 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGGCGAACGACCCGCTGAAG 1783590 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG---GAA 74921 |||||||| |||||| ||||||||||| | ||| | ||| || || | || | Sbjct 1783589 AAGATGCCCTCGACAGCGGCAAAGGCGACGACGCGCTCCGC-AAAGGAGGCCCGCTTGTG 1783531 Query 74922 GTC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGC 74980 ||| ||||| | ||||| || || || || ||||| || || | || || | || Sbjct 1783530 GTCGATCCAGCGCATGGCCCACTCGGCCTTGCGCTTGACGGCGGGCAGCGTCTCAACGGC 1783471 Query 74981 TTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTA 75040 | |||||| | |||||| | || || |||| | | |||| || | || ||||| Sbjct 1783470 GTTGAAGAGCATGTGCTTCTCCTGCGGGTCGTTGATGTACGTGTCGATGAGCAGCGAGTA 1783411 Query 75041 CGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 | |||| || || || ||| | | |||| | ||||||| | |||||||||| Sbjct 1783410 CATCTCAGAGTGGATGTTCTCAATCATAATCTGGAAGCCGTAGAAGCAGCGCGCCTCTGG 1783351 Query 75101 AATCTGTACAT--CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAG 75158 | ||| || | | |||| || | ||| ||||| | || |||||||| | Sbjct 1783350 CAGCTGCACCTCGCACATGAAGCGCTC--GACGAGGTTCTCGTTCACAATGCCGTCGCTG 1783293 Query 75159 GCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCC 75218 |||||||| || || || || ||||||||||| |||| ||| |||| | | Sbjct 1783292 GCGGCGAAGAAGGCGAGGACGTGCTTGATAAAGTGCTGCTCCGTGTCCTTGAGGCCGCGC 1783233 Query 75219 CAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCC 75278 || | | ||||| | || || |||| |||||| | |||||||| | | ||| Sbjct 1783232 CAGTGGTCGAGGTCGCGCGACAGGTCAACCTCCTCCGCGGTCCAGAAGGAGGCGACGGCC 1783173 Query 75279 TTTTTGTACAAAGACCACA 75297 || ||||||| ||||||| Sbjct 1783172 TTCTTGTACATGGACCACA 1783154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214946609200