Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4 187 3e-42 seq10 178 1e-39 >seq4 Length=2372320 Score = 187 bits (206), Expect = 3e-42 Identities = 435/649 (67%), Gaps = 9/649 (1%) Strand=Plus/Minus Query 81015 GTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGAT 81074 |||||| |||||||||||| |||||| ||||| || ||||| ||| | | ||| || Sbjct 2278751 GTTGCACGCGTCCTTGTAGAGCATGTATGGGGTGCCCGTCTCCGTCTGGGCGTCGAGAAT 2278692 Query 81075 GGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTT 81134 ||| ||| | || | ||| ||| ||||||| ||||| |||||| | ||||| Sbjct 2278691 GGCAAACCAGAGCTTGGATGCCGACACCTTCTTGCGGCCCTTGCCCTCGGCCTCGTACTT 2278632 Query 81135 GGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGT-TCAGTGAGGTCTGGGCACTCGTTA 81192 |||| || | || |||| | | |||| | || || | ||| | |||||||||| Sbjct 2278631 CTCGTACAGGCGC-TCAAACTCGTCGCCGT-ATGTGTCCGAGAGACCGGGGCACTCGTGC 2278574 Query 81193 GGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATC 81252 |||||||| || ||| || || | ||| || |||||| || ||| || | | Sbjct 2278573 GGGCACATGAGCGTCCACTCTTCGTTGGCCTCAACGCGCTTCATAAACAGGTCGGGCACC 2278514 Query 81253 CAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAAC 81312 || || ||| ||| ||||||||| ||| ||||||| |||| ||| || | Sbjct 2278513 CACAGCGCGAAGAAGAGGTCGCGGGCACGCTGCTCCTCAACACCGGTGTTCTTCTTCAGC 2278454 Query 81313 TCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTG 81372 ||||||||||| | |||||| || ||||| ||||| || |||||||| | | | || | Sbjct 2278453 TCGAGAAAGTCAAAGATGTCTGCGTGCCACGGCTCGAGGTACACGGC-AAAGGCGCCGGG 2278395 Query 81373 CGAC----GGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGG 81428 | | ||| ||||||| |||||| || || || ||| || || |||| ||| || Sbjct 2278394 CCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCCGTGTTGTTGAACACGCGCAGCATGGG 2278335 Query 81429 GATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTT 81488 | || || | || || ||||| || || | || ||| || ||||||| | || Sbjct 2278334 CACGAGCCCGTTCGAGTGGCCGTTGGTGCCGGCAATGTACGAGCCGCTGGCGCGGATGTT 2278275 Query 81489 GCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGT 81548 | | ||| || ||||| || | ||| || ||| |||||| || | || Sbjct 2278274 GTGCACGCTAAGGCCAATGCCGCCGGCTGTCTTGGAGATCATGGCACACGTCTTGAGCGT 2278215 Query 81549 CTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTG 81608 || || || ||||||||||| || | |||||| || | ||| ||||| || ||| Sbjct 2278214 ATCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGGAGGAAGCAGCTGCTCAGCTG 2278155 Query 81609 AGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAA 81657 ||| | | ||| | |||||||| ||||| | |||||| ||||| Sbjct 2278154 CGGGATGGGCGTGCCAGAGTTGAACAGCGTTGGCGACGCGTGCGTGAAA 2278106 Score = 129 bits (142), Expect = 7e-25 Identities = 358/540 (66%), Gaps = 23/540 (4%) Strand=Plus/Minus Query 80337 GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGT 80396 ||||||||| | || ||||| || | ||| ||| ||| || | ||| | || Sbjct 2279842 GTGCTTGTTCACCACCTGGAACTCGCCAGAGAGCACGCGGCGCGAGTAGATGTTGCTCGT 2279783 Query 80397 GTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGG 80456 ||| ||||||| | ||||||||| ||||| ||||| || ||| ||| || ||||| || Sbjct 2279782 GTAGGGCTCAATCGACTCGTTGTTGCCGAGAATCTGGGCAGTGGACGCGGTGGGCATGGG 2279723 Query 80457 GCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCA 80516 | |||| ||| || || || | ||||| |||||| | |||||| || | ||| Sbjct 2279722 CGCAACCAGCAGCGAGTTGCGAATGCCGTCCTTCTTCACGCGCTCGCG--AAGC-GACTC 2279666 Query 80517 AAAATCAACCCCAACGCTGTG--------ACCCCACATGTCGTGCTGCAAGATGCCCTCC 80568 |||| || || | ||| | |||||||||| ||| | |||||||| Sbjct 2279665 CCAATC--CCACAGGTCCGTGGGCTTCACATCCCACATGTCAAACTGAAGAATGCCCTCA 2279608 Query 80569 GACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGAC 80628 || | || || ||| | || |||||||| || ||||| || | ||| || Sbjct 2279607 GAGGTGGGCGAGCCCTCAAAAGTCTCGTATGGCCCCTCAACGGACGCAATCTCCGTGGAG 2279548 Query 80629 TCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTG---TTCACACCGCGCGCC 80685 | ||||| |||| || ||| ||| || | |||| ||||| |||| ||| Sbjct 2279547 GCTTCGAGGGCGCCGTGGTAGATGGTCTCGAAAAT---CTTGCGGTTCACCTCGCGTGCC 2279491 Query 80686 T-GTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCC 80744 | || | | ||| || | | | ||||| || ||| |||| || |||||||| ||||| Sbjct 2279490 TCGTCGCT-GTCAAAGGGAAGACGCATCAGGATAAACGCGTCGGCAAGGCCCTGCACGCC 2279432 Query 80745 GATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGGCCTCCGGAATTGGGTAAAAGT 80803 ||| | || |||||||||||| |||| || | || | ||||| || | ||||| ||| Sbjct 2279431 AATGCCAATGGGGCGGTGGCGCATGTTGGACTTGCGC-GCCTCTGGGACAGGGTAGTAGT 2279373 Query 80804 TATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCT 80863 | | ||||| | ||| |||||||| || | ||| ||||| || || || |||| Sbjct 2279372 TGATGTCGATAATCTTGTTGAGGTTGCGCGTGAGCACCTTGGTAACCTCGTGCAGCTTCT 2279313 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 || |||| ||||| ||||||||||||||||| |||||| |||||| |||| | |||| Sbjct 2280411 GCACGCGAGCGCAGGTAGTACATGCCCGTCTTAAGGCCCCGCTTCCACGCGTAAAAGTGC 2280352 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || || ||||||| ||| |||||| ||| | ||| | ||||| ||| Sbjct 2280351 ATGGACGTGAGCTTGCCAAAGTTGGGGTCGGAGATGTGCACGTTGAACGACTGGCTCTGG 2280292 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAAT 80186 ||| || || || ||||| || ||||| ||||| Sbjct 2280291 TCGATAAAGGCGCCGCGATCAGCAGCCATGTCAAT 2280257 >seq10 Length=1852485 Score = 178 bits (196), Expect = 1e-39 Identities = 304/441 (69%), Gaps = 0/441 (0%) Strand=Plus/Plus Query 31962 GCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGC 32021 ||||||||| || | | |||||| |||||||| |||||||||||| | | | | Sbjct 1769066 GCGGTCCATCCCCAGCATCATGGACGGGCTCAAGCCGGGCCAGCGCAAGGTGCTCTTCTC 1769125 Query 32022 CTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGC 32081 |||| ||||| || || | || || |||||||||||||| | || ||||| | Sbjct 1769126 CTGCTTCAAGCGCAAGCTCAAGGACGAGATCAAGGTGGCGCAGCTTGCCGGGTACGTCTC 1769185 Query 32082 AGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGC 32141 ||||| ||||||| |||||||||||| | || ||||||||||| | | || Sbjct 1769186 GGAGCACTCGGCCTACCACCACGGCGAGATGAGCCTGGCCGGCACCATTGTGGGCATGGC 1769245 Query 32142 TCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGAC 32201 ||| || || || || ||||| ||| | || ||| ||| |||||||| || Sbjct 1769246 GCAGCGGTTCGTGGGCAGCAACAACCTCAACCTGCTGCTGCCCATTGGCCAGTTTGGCAC 1769305 Query 32202 CCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACC 32261 || || || || |||||||| || || ||||| ||||||||||||||| || | || Sbjct 1769306 GCGCCTGGCGGGCGGCAAGGACGCGGCCAGCTCGCGTTACATCTTCACCTCACTGTCGCC 1769365 Query 32262 TTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGA 32321 | |||||||||| ||| || | ||||||| || ||||||| || || || Sbjct 1769366 GCTGGCGCGCAAGATCTTCCACTTGGCGGACGACGCCCTGCTCAACCACCTGGAGGACGA 1769425 Query 32322 CGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGG 32381 ||| ||| | | ||||| | ||| ||| || | || || ||| | |||||||||| Sbjct 1769426 CGGGCAGACGATTGAGCCAGAGTTTTACGCGCCCATCCTGCCCATGGTGCTGGTGAACGG 1769485 Query 32382 TGCAGAAGGCATCGGAACGGG 32402 || |||||||| ||||| Sbjct 1769486 CAGCGACGGCATCGGCACGGG 1769506 Score = 165 bits (182), Expect = 9e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||||||| || |||||||| || || |||||||||||| || | Sbjct 1590559 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACACTTGAGGTTGAGCCATCT 1590500 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || |||| || | ||||| || || |||||||||||||| || || || |||||| Sbjct 1590499 GACTCGATTGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 1590440 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || |||||||| ||||| || ||||| | || || || ||| ||||| || Sbjct 1590439 CAGCGGCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGC-GACTACAA 1590381 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| ||||| || || |||| || |||||||| Sbjct 1590380 CATCCAGAAGGAGAGCACGCTTCACCTTGTGCTGCGCCTGCGCGGTGG 1590333 Score = 161 bits (178), Expect = 1e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||||||| || |||||||| || || |||||||||||| || | Sbjct 1590787 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACACTTGAGGTTGAGCCATCT 1590728 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || |||| || | ||||| || || |||||||||||||| || || || |||||| Sbjct 1590727 GACTCGATTGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 1590668 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || |||||||| ||||| || ||||| | || || || ||| ||||| || Sbjct 1590667 CAGCGGCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGC-GACTACAA 1590609 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| ||||| || || | || || |||||||| Sbjct 1590608 CATCCAGAAGGAGAGCACGCTTCACCTTGTGCTTCGCCTGCGCGGTGG 1590561 Score = 156 bits (172), Expect = 5e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||||||| || |||||||| || || |||||||||||| || | Sbjct 1591015 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACGCTTGAGGTTGAGCCATCT 1590956 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || |||| || | ||||| || || |||||||||||||| || || || |||||| Sbjct 1590955 GACTCGATTGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 1590896 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || ||||| || ||||| || ||||| | || || || ||| ||||| || Sbjct 1590895 CAGCGGCTTATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGC-GACTACAA 1590837 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| ||||| || || | || || |||||||| Sbjct 1590836 CATCCAGAAGGAGAGCACGCTTCACCTTGTGCTTCGCCTGCGCGGTGG 1590789 Score = 114 bits (126), Expect = 1e-20 Identities = 249/370 (67%), Gaps = 2/370 (1%) Strand=Plus/Plus Query 31201 GGAATTCCGAAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGCACG 31260 || || || ||||| |||||||||||| |||||| | ||| ||| |||||||| Sbjct 1767743 GGCATCCCCAAGCTGGACGACGCCAACGAGGCCGGCGGGCGCAACTCGTCAAAGTGCACG 1767802 Query 31261 CTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTAT-TGCTGGCTTGAGTGTTGT 31319 || || | |||||||||||||| || |||||||| || | || ||| || | || | Sbjct 1767803 CTCATCCTGACCGAGGGTGACTCCGCCAAGGCGCTGGCGGTGAGCGGGC-TGGGCGTGCT 1767861 Query 31320 GGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGC 31379 |||||| | | ||| || || |||||||| ||||||| || |||||| || || || Sbjct 1767862 TGGGCGCGACTACTACGGCGTCTTCCCGCTCCGCGGCAAGCTGCTTAACGTGCGCGAGGC 1767921 Query 31380 CTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCT 31439 || || ||| ||| ||| || | ||| | ||| | |||||| | || || Sbjct 1767922 GTCGCACAAGCAGATTATGGACAACGCGGAGGTGAAGAACATTGCCAAGATCATGGGCCT 1767981 Query 31440 TCAGCATGGCAAGGTATATAATTCACTGAGAGAATTGCGGTACGGTCGCCTCATGATTAT 31499 || ||| | | || | | || | | || ||||| || |||||||| || Sbjct 1767982 CAAGTTTGGGCACGAGTACACGACGACGAAGCAGCTCCGATACGGGCGGCTCATGATCAT 1768041 Query 31500 GACCGACGCAGATCTCGACGGCAGTCACATCAAGGGTCTTGTCCTAAATATGTTCCACGT 31559 |||||| |||| |||||| ||||||||||| || || | || | ||||| Sbjct 1768042 GACCGATCAGGATCAGGACGGCTCCCACATCAAGGGCCTCCTCATCAACTTCATCCACCA 1768101 Query 31560 CTACTGGCCC 31569 || ||||||| Sbjct 1768102 CTTCTGGCCC 1768111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309302152480