Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq10 89.7 3e-13 >seq10 Length=1852485 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || ||| || | || |||| ||| | || || ||||||||||| || ||||| || || Sbjct 1590329 GTTGCCACCGCGCAGGCGCAGCACAAGGTGAAGCGTGCTCTCCTTCTGGATGTTGTAGTC 1590388 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 || || || |||| ||||| || || || ||||| || | ||||| ||||| || Sbjct 1590389 GCTCAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGG 1590448 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 ||| | ||||||||||| |||| || | || ||| | ||| | ||| || Sbjct 1590449 CGGGATGCCCTCCTTGTCCTGGATC-TTCGCCTTGACGTTCTCAATCGAGTCAGATGGCT 1590507 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || | || || || || || || | ||| |||||||| ||||||||| Sbjct 1590508 CAACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATG 1590560 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || || ||||||||||| || ||||| || || || || || |||| ||||| || Sbjct 1590813 TGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGC 1590872 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| || | ||||| ||||| ||||| | ||||||||||| |||| || Sbjct 1590873 TTGCCGGCAAAGATAAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATC-TT 1590931 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| | ||| | ||| ||| || || | || || || || || || Sbjct 1590932 CGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAACCTCAAGCGTGATGGTCTTGCCAGT 1590991 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 | ||| |||||||| ||||||||| Sbjct 1590992 CAGCGTCTTCACAAAGATCTGCATG 1591016 Score = 84.2 bits (92), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || || ||||||||||| || ||||| || || || || || |||| ||||| || Sbjct 1590585 TGAAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCAAGCTGC 1590644 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || ||||| || | ||||| ||||| ||||| | ||||||||||| |||| || Sbjct 1590645 TTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATC-TT 1590703 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| | ||| | ||| ||| || || | || || || || || || Sbjct 1590704 CGCCTTGACGTTCTCAATCGAGTCAGATGGCTCAACCTCAAGTGTGATGGTCTTGCCAGT 1590763 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 | ||| |||||||| ||||||||| Sbjct 1590764 CAGCGTCTTCACAAAGATCTGCATG 1590788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729009291882