Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salpingoeca_20rosetta_20[genbank_20GCA_5F000188695.1_202011-02-10] 154 sequences; 55,440,309 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq10 107 2e-18 >seq10 Length=1852485 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| || || ||||| |||||| | || || ||||| || || || | Sbjct 1591017 CCATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACGCTTGAGGTTGAGCCAT 1590958 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||||||||||||| ||||| || || || ||||| || ||||| || || || | Sbjct 1590957 CTGACTCGATTGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACC 1590898 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | |||||||| || | || ||| | || | ||| |||| Sbjct 1590897 AGCAGCGGCTTATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACA 1590838 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || |||||| || | || | || | || |||| |||||||| Sbjct 1590837 ACATCCAGAAGGAGAGCACGCTTCACCTTGTGCTTCGCCTGCGCGGTGGCAT 1590786 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | || || ||||| || || || || Sbjct 1590560 CATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACACTTGAGGTTGAGCCATC 1590501 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||||||||||| ||||| || || || ||||| || ||||| || || || || Sbjct 1590500 TGACTCGATTGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 1590441 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || ||||| || | || ||| | || | ||| ||||| Sbjct 1590440 GCAGCGGCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACAA 1590381 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||| || |||||| || | || | || |||| |||| ||||||| Sbjct 1590380 CATCCAGAAGGAGAGCACGCTTCACCTTGTGCTGCGCCTGCGCGGTGGCA 1590331 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | || || ||||| || || || || Sbjct 1590788 CATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACACTTGAGGTTGAGCCATC 1590729 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||||||||||| ||||| || || || ||||| || ||||| || || || || Sbjct 1590728 TGACTCGATTGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 1590669 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || ||||| || | || ||| | || | ||| ||||| Sbjct 1590668 GCAGCGGCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTGAGCGACTACAA 1590609 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||| || | || | || | || |||| |||||||| Sbjct 1590608 CATCCAGAAGGAGAGCACGCTTCACCTTGTGCTTCGCCTGCGCGGTGGCAT 1590558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917562782080